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We present a robust and scalable preconditioner for the solution of large-scale linear systems that arise from the discretization of elliptic PDEs amenable to rank compression. The preconditioner is based on hierarchical low-rank…

Numerical Analysis · Mathematics 2017-12-27 Gustavo Chávez , George Turkiyyah , Stefano Zampini , David Keyes

The problem of accelerating drug discovery relies heavily on automatic tools to optimize precursor molecules to afford them with better biochemical properties. Our work in this paper substantially extends prior state-of-the-art on…

Chemical Physics · Physics 2019-10-22 Wengong Jin , Regina Barzilay , Tommi Jaakkola

We introduce PDE-Transformer, an improved transformer-based architecture for surrogate modeling of physics simulations on regular grids. We combine recent architectural improvements of diffusion transformers with adjustments specific for…

Machine Learning · Computer Science 2025-06-02 Benjamin Holzschuh , Qiang Liu , Georg Kohl , Nils Thuerey

Traffic forecasting is an indispensable part of Intelligent transportation systems (ITS), and long-term network-wide accurate traffic speed forecasting is one of the most challenging tasks. Recently, deep learning methods have become…

Artificial Intelligence · Computer Science 2021-04-13 Haoyang Yan , Xiaolei Ma

Multiscale is a hallmark feature of complex nonlinear systems. While the simulation using the classical numerical methods is restricted by the local \textit{Taylor} series constraints, the multiscale techniques are often limited by finding…

Dynamical Systems · Mathematics 2024-05-07 Asif Hamid , Danish Rafiq , Shahkar Ahmad Nahvi , Mohammad Abid Bazaz

Both local details and global context are crucial in medical image segmentation, and effectively integrating them is essential for achieving high accuracy. However, existing mainstream methods based on CNN-Transformer hybrid architectures…

Computer Vision and Pattern Recognition · Computer Science 2025-09-29 Dayu Tan , Zhenpeng Xu , Yansen Su , Xin Peng , Chunhou Zheng , Weimin Zhong

Accurate and robust trajectory prediction of neighboring agents is critical for autonomous vehicles traversing in complex scenes. Most methods proposed in recent years are deep learning-based due to their strength in encoding complex…

Robotics · Computer Science 2023-03-27 Yujun Jiao , Mingze Miao , Zhishuai Yin , Chunyuan Lei , Xu Zhu , Linzhen Nie , Bo Tao

A class of preconditioners is introduced to enhance geometry optimisation and transition state search of molecular systems. We start from the Hessian of molecular mechanical terms, decompose it and retain only its positive definite part to…

Chemical Physics · Physics 2018-04-06 Letif Mones , Gabor Csanyi , Christoph Ortner

Fast, scalable decoding architectures that operate in a block-wise parallel fashion across space and time are essential for real-time fault-tolerant quantum computing. We introduce a scalable AI-based pre-decoder for the surface code that…

Quantum Physics · Physics 2026-04-15 Christopher Chamberland , Jan Olle , Muyuan Li , Scott Thornton , Igor Baratta

Central to the success of Transformers is the attention block, which effectively models global dependencies among input tokens associated to a dataset. However, we theoretically demonstrate that standard attention mechanisms in transformers…

Machine Learning · Computer Science 2026-03-31 Hemanth Saratchandran

Learning system dynamics directly from observations is a promising direction in machine learning due to its potential to significantly enhance our ability to understand physical systems. However, the dynamics of many real-world systems are…

Machine Learning · Computer Science 2021-03-23 Karolis Martinkus , Aurelien Lucchi , Nathanaël Perraudin

Convolutional neural networks (CNNs) have been the consensus for medical image segmentation tasks. However, they suffer from the limitation in modeling long-range dependencies and spatial correlations due to the nature of convolution…

Computer Vision and Pattern Recognition · Computer Science 2023-01-10 Moein Heidari , Amirhossein Kazerouni , Milad Soltany , Reza Azad , Ehsan Khodapanah Aghdam , Julien Cohen-Adad , Dorit Merhof

The Transformer model is widely used in various application areas of machine learning, such as natural language processing. This paper investigates the approximation of the H\"older continuous function class…

Machine Learning · Computer Science 2025-04-21 Yuling Jiao , Yanming Lai , Yang Wang , Bokai Yan

Large-scale parallel numerical simulations are essential for a wide range of engineering problems that involve complex, coupled physical processes interacting across a broad range of spatial and temporal scales. The data structures involved…

Mathematical Software · Computer Science 2018-10-11 Fande Kong , Roy H. Stogner , Derek R. Gaston , John W. Peterson , Cody J. Permann , Andrew E. Slaughter , Richard C. Martineau

We describe an efficient hierarchical method to compute attention in the Transformer architecture. The proposed attention mechanism exploits a matrix structure similar to the Hierarchical Matrix (H-Matrix) developed by the numerical…

Machine Learning · Computer Science 2021-07-27 Zhenhai Zhu , Radu Soricut

We introduce a universal sparse preconditioner that accelerates geometry optimisation and saddle point search tasks that are common in the atomic scale simulation of materials. Our preconditioner is based on the neighbourhood structure and…

The self-supervised ultrasound (US) video model pretraining can use a small amount of labeled data to achieve one of the most promising results on US diagnosis. However, it does not take full advantage of multi-level knowledge for learning…

Computer Vision and Pattern Recognition · Computer Science 2022-10-14 Chunhui Zhang , Yixiong Chen , Li Liu , Qiong Liu , Xi Zhou

Predicting effective thermal conductivity by solving a Partial Differential Equation (PDE) defined on a high-resolution Representative Volume Element (RVE) is a computationally intensive task. In this paper, we tackle the task by proposing…

Numerical Analysis · Mathematics 2024-04-04 Changqing Ye , Shubin Fu , Eric T. Chung

High-order implicit shock tracking (fitting) is a class of high-order numerical methods that use numerical optimization to simultaneously compute a high-order approximation to a conservation law solution and align elements of the…

Numerical Analysis · Mathematics 2024-06-28 Jakob Vandergrift , Matthew J. Zahr

Although neural operators are widely used in data-driven physical simulations, their training remains computationally expensive. Recent advances address this issue via downstream learning, where a model pretrained on simpler problems is…

Machine Learning · Computer Science 2025-11-17 Mikhail Masliaev , Dmitry Gusarov , Ilya Markov , Alexander Hvatov