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Deep neural networks excel in mapping genomic DNA sequences to associated readouts (e.g., protein-DNA binding). Beyond prediction, the goal of these networks is to reveal to scientists the underlying motifs (and their syntax) which drive…

Genomics · Quantitative Biology 2024-10-10 Alex M. Tseng , Gokcen Eraslan , Tommaso Biancalani , Gabriele Scalia

Interpretability of deep neural networks (DNNs) is essential since it enables users to understand the overall strengths and weaknesses of the models, conveys an understanding of how the models will behave in the future, and how to diagnose…

Computer Vision and Pattern Recognition · Computer Science 2017-03-31 Yinpeng Dong , Hang Su , Jun Zhu , Bo Zhang

Resting-state functional magnetic resonance imaging (rs-fMRI) can reflect spontaneous neural activities in brain and is widely used for brain disorder analysis.Previous studies propose to extract fMRI representations through diverse…

Quantitative Methods · Quantitative Biology 2023-06-27 Qianqian Wang , Wei Wang , Yuqi Fang , P. -T. Yap , Hongtu Zhu , Hong-Jun Li , Lishan Qiao , Mingxia Liu

The analysis of DNA sequences has become critical in numerous fields, from evolutionary biology to understanding gene regulation and disease mechanisms. While deep neural networks can achieve remarkable predictive performance, they…

Machine Learning · Computer Science 2026-04-15 Nicolas Huynh , Krzysztof Kacprzyk , Ryan Sheridan , David Bentley , Mihaela van der Schaar

A new ensemble framework for interpretable model called Linear Iterative Feature Embedding (LIFE) has been developed to achieve high prediction accuracy, easy interpretation and efficient computation simultaneously. The LIFE algorithm is…

Machine Learning · Statistics 2021-03-19 Agus Sudjianto , Jinwen Qiu , Miaoqi Li , Jie Chen

Recent applications of pattern recognition techniques on brain connectome classification using functional connectivity (FC) are shifting towards acknowledging the non-Euclidean topology and dynamic aspects of brain connectivity across time.…

Machine Learning · Computer Science 2024-11-12 Sin-Yee Yap , Junn Yong Loo , Chee-Ming Ting , Fuad Noman , Raphael C. -W. Phan , Adeel Razi , David L. Dowe

Matrix factorization has now become a dominant solution for personalized recommendation on the Social Web. To alleviate the cold start problem, previous approaches have incorporated various additional sources of information into traditional…

Information Retrieval · Computer Science 2017-08-15 Zhenghua Xu , Cheng Chen , Thomas Lukasiewicz , Yishu Miao

We introduce PGF-Net (Progressive Gated-Fusion Network), a novel deep learning framework designed for efficient and interpretable multimodal sentiment analysis. Our framework incorporates three primary innovations. Firstly, we propose a…

Machine Learning · Computer Science 2025-08-25 Bin Wen , Tien-Ping Tan

When autonomous agents observe different domains of a shared environment, each signal they exchange mixes relevant and irrelevant dimensions. No existing mechanism lets the receiver evaluate which dimensions to absorb. We introduce…

Multiagent Systems · Computer Science 2026-04-07 Hongwei Xu

Visual image reconstruction from functional Magnetic Resonance Imaging (fMRI) is a fundamental task in brain decoding, providing a crucial pathway for understanding human perceptual mechanisms and developing advanced brain-computer…

Computer Vision and Pattern Recognition · Computer Science 2026-05-20 Yudan Ren , Pengcheng Shi , Zihan Ma , Xiaowei He , Xiao Li

We present a novel graphical framework for modeling non-negative sequential data with hierarchical structure. Our model corresponds to a network of coupled non-negative matrix factorization (NMF) modules, which we refer to as a positive…

Machine Learning · Computer Science 2009-07-16 Brian K. Vogel

We propose a novel 3D morphable model for complete human heads based on hybrid neural fields. At the core of our model lies a neural parametric representation that disentangles identity and expressions in disjoint latent spaces. To this…

Computer Vision and Pattern Recognition · Computer Science 2023-04-17 Simon Giebenhain , Tobias Kirschstein , Markos Georgopoulos , Martin Rünz , Lourdes Agapito , Matthias Nießner

Nonnegative Matrix Factorization (NMF) is a widely applied technique in the fields of machine learning and data mining. Graph Regularized Non-negative Matrix Factorization (GNMF) is an extension of NMF that incorporates graph regularization…

Machine Learning · Computer Science 2024-03-19 Zhen Wang , Wenwen Min

Nonnegative Matrix Factorization (NMF) is the problem of approximating a nonnegative matrix with the product of two low-rank nonnegative matrices and has been shown to be particularly useful in many applications, e.g., in text mining, image…

Optimization and Control · Mathematics 2012-08-13 Nicolas Gillis , François Glineur

Disease phenotyping algorithms process observational clinical data to identify patients with specific diseases. Supervised phenotyping methods require significant quantities of expert-labeled data, while unsupervised methods may learn…

Machine Learning · Computer Science 2019-03-27 Victor Rodriguez , Adler Perotte

Nonnegative matrix factorization (NMF) has an established reputation as a useful data analysis technique in numerous applications. However, its usage in practical situations is undergoing challenges in recent years. The fundamental factor…

Machine Learning · Computer Science 2016-05-04 Mariano Tepper , Guillermo Sapiro

Modern industrial recommendation systems improve recommendation performance by integrating multimodal representations from pre-trained models into ID-based Click-Through Rate (CTR) prediction frameworks. However, existing approaches…

Information Retrieval · Computer Science 2026-04-17 Alin Fan , Hanqing Li , Sihan Lu , Jingsong Yuan , Jiandong Zhang

Symbol Level Precoding (SLP) has attracted significant research interest due to its ability to exploit interference for energy-efficient transmission. This paper proposes an unsupervised deep-neural network (DNN) based SLP framework.…

Signal Processing · Electrical Eng. & Systems 2021-11-17 Abdullahi Mohammad , Christos Masouros , Yiannis Andreopoulos

We propose a novel framework for representing neural fields on triangle meshes that is multi-resolution across both spatial and frequency domains. Inspired by the Neural Fourier Filter Bank (NFFB), our architecture decomposes the spatial…

Computer Vision and Pattern Recognition · Computer Science 2025-07-22 Avigail Cohen Rimon , Tal Shnitzer , Mirela Ben Chen

This work developed novel complex matrix factorization methods for face recognition; the methods were complex matrix factorization (CMF), sparse complex matrix factorization (SpaCMF), and graph complex matrix factorization (GraCMF). After…

Computer Vision and Pattern Recognition · Computer Science 2016-12-09 Viet-Hang Duong , Yuan-Shan Lee , Bach-Tung Pham , Seksan Mathulaprangsan , Pham The Bao , Jia-Ching Wang