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Graph-structured data is ubiquitous throughout natural and social sciences, and Graph Neural Networks (GNNs) have recently been shown to be effective at solving prediction and inference problems on graph data. In this paper, we propose and…

Machine Learning · Computer Science 2024-01-12 Victoria M. Dax , Jiachen Li , Kevin Leahy , Mykel J. Kochenderfer

Motivated by the increasing need for fast processing of large-scale graphs, we study a number of fundamental graph problems in a message-passing model for distributed computing, called $k$-machine model, where we have $k$ machines that…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-02-10 Khalid Hourani , Hartmut Klauck , William K. Moses , Danupon Nanongkai , Gopal Pandurangan , Peter Robinson , Michele Scquizzato

Motivated by the increasing need to understand the distributed algorithmic foundations of large-scale graph computations, we study some fundamental graph problems in a message-passing model for distributed computing where $k \geq 2$…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-27 Gopal Pandurangan , Peter Robinson , Michele Scquizzato

Combinatorial optimization (CO) problems arise across a broad spectrum of domains, including medicine, logistics, and manufacturing. While exact solutions are often computationally infeasible, many practical applications require…

Machine Learning · Computer Science 2025-05-27 Arman Mielke , Uwe Bauknecht , Thilo Strauss , Mathias Niepert

Large Language Models (LLMs) excel at language understanding but remain limited in knowledge-intensive domains due to hallucinations, outdated information, and limited explainability. Text-based retrieval-augmented generation (RAG) helps…

Computation and Language · Computer Science 2026-02-09 Larissa Pusch , Alexandre Courtiol , Tim Conrad

We define a graph-based rate optimization problem and consider its computation, which provides a unified approach to the computation of various theoretical limits, including the (conditional) graph entropy, rate-distortion functions and…

Information Theory · Computer Science 2025-03-18 Deheng Yuan , Tao Guo , Zhongyi Huang , Shi Jin

Many real world problems are NP-Hard problems are a very large part of them can be represented as graph based problems. This makes graph theory a very important and prevalent field of study. In this work a new bio-inspired meta-heuristics…

Neural and Evolutionary Computing · Computer Science 2013-10-15 Chiranjib Sur , Anupam Shukla

Combinatorial optimization problems are typically tackled by the branch-and-bound paradigm. We propose a new graph convolutional neural network model for learning branch-and-bound variable selection policies, which leverages the natural…

Machine Learning · Computer Science 2019-10-31 Maxime Gasse , Didier Chételat , Nicola Ferroni , Laurent Charlin , Andrea Lodi

Optimizing chemical properties is a challenging task due to the vastness and complexity of chemical space. Here, we present a generative energy-based architecture for implicit chemical property optimization, designed to efficiently generate…

Biomolecules · Quantitative Biology 2025-06-19 Luca Miglior , Lorenzo Simone , Marco Podda , Davide Bacciu

Retrieval Augmented Generation (RAG) frameworks improve the accuracy of large language models (LLMs) by integrating external knowledge from retrieved documents, thereby overcoming the limitations of models' static intrinsic knowledge.…

Information Retrieval · Computer Science 2025-09-19 Jingjie Zheng , Aryo Pradipta Gema , Giwon Hong , Xuanli He , Pasquale Minervini , Youcheng Sun , Qiongkai Xu

Integrating large language models (LLMs) with knowledge graphs derived from domain-specific data represents an important advancement towards more powerful and factual reasoning. As these models grow more capable, it is crucial to enable…

Artificial Intelligence · Computer Science 2024-04-19 Stefan Dernbach , Khushbu Agarwal , Alejandro Zuniga , Michael Henry , Sutanay Choudhury

Knowledge Graphs (KGs) are crucial in the field of artificial intelligence and are widely used in downstream tasks, such as question-answering (QA). The construction of KGs typically requires significant effort from domain experts. Large…

Computation and Language · Computer Science 2025-02-04 Rui Yang , Boming Yang , Aosong Feng , Sixun Ouyang , Moritz Blum , Tianwei She , Yuang Jiang , Freddy Lecue , Jinghui Lu , Irene Li

Graph-structured data are central to many scientific and industrial applications where the goal is to optimize expensive black-box objectives defined over graph structures or node configurations -- as seen in molecular design, supply…

Optimization and Control · Mathematics 2026-04-22 Yilin Xie , Shiqiang Zhang , Jixiang Qing , Ruth Misener , Calvin Tsay

Graphs are mathematical tools that can be used to represent complex real-world interconnected systems, such as financial markets and social networks. Hence, machine learning (ML) over graphs has attracted significant attention recently.…

Machine Learning · Computer Science 2023-10-24 O. Deniz Kose , Yanning Shen , Gonzalo Mateos

Drug repurposing is often framed as a candidate identification task, but existing approaches provide limited guidance for distinguishing biologically plausible candidates from historically well-connected ones. Here we introduce DrugKLM, a…

While Large Language Models (LLMs) demonstrate exceptional performance in a multitude of Natural Language Processing (NLP) tasks, they encounter challenges in practical applications, including issues with hallucinations, inadequate…

Computation and Language · Computer Science 2024-06-13 Yihao Li , Ru Zhang , Jianyi Liu

Graph coarsening is a widely used dimensionality reduction technique for approaching large-scale graph machine learning problems. Given a large graph, graph coarsening aims to learn a smaller-tractable graph while preserving the properties…

Machine Learning · Statistics 2022-10-04 Manoj Kumar , Anurag Sharma , Sandeep Kumar

The recent ISO SQL:2023 standard adopts SQL/PGQ (Property Graph Queries), facilitating graph-like querying within relational databases. This advancement, however, underscores a significant gap in how to effectively optimize SQL/PGQ queries…

Databases · Computer Science 2024-12-10 Yunkai Lou , Longbin Lai , Bingqing Lyu , Yufan Yang , Xiaoli Zhou , Wenyuan Yu , Ying Zhang , Jingren Zhou

From logistics to the natural sciences, combinatorial optimisation on graphs underpins numerous real-world applications. Reinforcement learning (RL) has shown particular promise in this setting as it can adapt to specific problem structures…

Machine Learning · Computer Science 2022-05-30 Thomas D. Barrett , Christopher W. F. Parsonson , Alexandre Laterre

Reinforcement learning has emerged as a powerful paradigm for improving large language model (LLM) reasoning, where rollouts are sampled from the policy and reward signals computed on those rollouts are used to update the policy. However,…

Machine Learning · Computer Science 2026-05-25 Tianyang Luo , Tao Feng , Zhigang Hua , Yan Xie , Shuang Yang , Ge Liu , Jiaxuan You