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Positional encoding (PE) underpins how permutation-invariant Transformers represent sequence order, yet how positional information is processed and stored remains poorly understood. Modern PE methods such as RoPE still struggle on tasks…

Computation and Language · Computer Science 2026-05-29 Pierre-Antoine Lequeu , Camille Barboule , Benjamin Piwowarski

The local inductive bias of message-passing graph neural networks (GNNs) hampers their ability to exploit key structural information (e.g., connectivity and cycles). Positional encoding (PE) and Persistent Homology (PH) have emerged as two…

Machine Learning · Computer Science 2025-06-09 Yogesh Verma , Amauri H. Souza , Vikas Garg

Positional Encodings (PEs) are a critical component of Transformer-based Large Language Models (LLMs), providing the attention mechanism with important sequence-position information. One of the most popular types of encoding used today in…

Computation and Language · Computer Science 2025-05-14 Federico Barbero , Alex Vitvitskyi , Christos Perivolaropoulos , Razvan Pascanu , Petar Veličković

Transformer architecture has enabled recent progress in speech enhancement. Since Transformers are position-agostic, positional encoding is the de facto standard component used to enable Transformers to distinguish the order of elements in…

Audio and Speech Processing · Electrical Eng. & Systems 2024-02-15 Qiquan Zhang , Meng Ge , Hongxu Zhu , Eliathamby Ambikairajah , Qi Song , Zhaoheng Ni , Haizhou Li

Rotary Position Embedding (RoPE) is the de facto positional encoding in large language models due to its ability to encode relative positions and support length extrapolation. When adapted to vision transformers, the standard axial…

Computer Vision and Pattern Recognition · Computer Science 2026-02-04 Haoyu Liu , Sucheng Ren , Tingyu Zhu , Peng Wang , Cihang Xie , Alan Yuille , Zeyu Zheng , Feng Wang

The Transformer architecture has revolutionized various regions since it was proposed, and its effectiveness largely depends on the ability to encode positional information. Traditional position encoding methods exhibit significant…

Computer Vision and Pattern Recognition · Computer Science 2025-06-05 Hao Yu , Tangyu Jiang , Shuning Jia , Shannan Yan , Shunning Liu , Haolong Qian , Guanghao Li , Shuting Dong , Huaisong Zhang , Chun Yuan

We propose a novel positional encoding for learning graph on Transformer architecture. Existing approaches either linearize a graph to encode absolute position in the sequence of nodes, or encode relative position with another node using…

Machine Learning · Computer Science 2022-10-17 Wonpyo Park , Woonggi Chang , Donggeon Lee , Juntae Kim , Seung-won Hwang

Graph neural networks (GNNs) have become the standard learning architectures for graphs. GNNs have been applied to numerous domains ranging from quantum chemistry, recommender systems to knowledge graphs and natural language processing. A…

Machine Learning · Computer Science 2022-02-11 Vijay Prakash Dwivedi , Anh Tuan Luu , Thomas Laurent , Yoshua Bengio , Xavier Bresson

Transformer architectures rely on position encodings to model the spatial structure of input data. Rotary Position Encoding (RoPE) is a widely used method in language models that encodes relative positions through fixed, block-diagonal,…

Computer Vision and Pattern Recognition · Computer Science 2025-08-19 Sophie Ostmeier , Brian Axelrod , Maya Varma , Michael E. Moseley , Akshay Chaudhari , Curtis Langlotz

Positional encoding mechanisms enable Transformers to model sequential structure and long-range dependencies in text. While absolute positional encodings struggle with extrapolation to longer sequences due to fixed positional…

Computation and Language · Computer Science 2025-09-09 Chang Dai , Hongyu Shan , Mingyang Song , Di Liang

Positional encoding is a vital component of Transformer architectures, enabling models to incorporate sequence order into self-attention mechanisms. Rotary Positional Embeddings (RoPE) have become a widely adopted solution due to their…

Computation and Language · Computer Science 2025-08-01 Ali Veisi , Delaram Fartoot , Hamidreza Amirzadeh

Graph Transformers (GTs) facilitate the comprehension of graph-structured data by calculating the self-attention of node pairs without considering node position information. To address this limitation, we introduce an innovative and…

Machine Learning · Computer Science 2023-12-12 Kushal Bose , Swagatam Das

The distinguishing power of graph transformers is closely tied to the choice of positional encoding: features used to augment the base transformer with information about the graph. There are two primary types of positional encoding:…

Machine Learning · Computer Science 2024-08-26 Mitchell Black , Zhengchao Wan , Gal Mishne , Amir Nayyeri , Yusu Wang

Recent advances in Transformer models allow for unprecedented sequence lengths, due to linear space and time complexity. In the meantime, relative positional encoding (RPE) was proposed as beneficial for classical Transformers and consists…

Machine Learning · Computer Science 2021-06-11 Antoine Liutkus , Ondřej Cífka , Shih-Lun Wu , Umut Şimşekli , Yi-Hsuan Yang , Gaël Richard

Multimodal position encoding is essential for vision-language models, yet there has been little systematic investigation into multimodal position encoding. We conduct a comprehensive analysis of multimodal Rotary Positional Embedding (RoPE)…

Computer Vision and Pattern Recognition · Computer Science 2026-04-07 Jie Huang , Xuejing Liu , Sibo Song , Ruibing Hou , Hong Chang , Junyang Lin , Shuai Bai

An important aspect subtending language understanding and production is the ability to independently encode positional and symbolic information of the words within a sentence. In Transformers, positional information is typically encoded…

Machine Learning · Computer Science 2025-11-18 Felipe Urrutia , Jorge Salas , Alexander Kozachinskiy , Cristian Buc Calderon , Hector Pasten , Cristobal Rojas

In transformer architectures, position encoding primarily provides a sense of sequence for input tokens. While the original transformer paper's method has shown satisfactory results in general language processing tasks, there have been new…

Computation and Language · Computer Science 2024-03-26 Eren Unlu

Positional Encodings (PEs) are used to inject word-order information into transformer-based language models. While they can significantly enhance the quality of sentence representations, their specific contribution to language models is not…

Computation and Language · Computer Science 2023-10-20 Lihu Chen , Gaël Varoquaux , Fabian M. Suchanek

Recently, Transformer has become a prevailing deep architecture for solving vehicle routing problems (VRPs). However, it is less effective in learning improvement models for VRP because its positional encoding (PE) method is not suitable in…

Machine Learning · Computer Science 2022-12-02 Yining Ma , Jingwen Li , Zhiguang Cao , Wen Song , Le Zhang , Zhenghua Chen , Jing Tang

Positional Encodings (PEs) are essential for injecting structural information into Graph Neural Networks (GNNs), particularly Graph Transformers, yet their empirical impact remains insufficiently understood. We introduce a unified…

Machine Learning · Computer Science 2026-01-15 Florian Grötschla , Jiaqing Xie , Roger Wattenhofer
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