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Related papers: Decomposing the Generalization Gap in PROTAC Activ…

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The imperfect modeling of ternary complexes has limited the application of computer-aided drug discovery tools in PROTAC research and development. In this study, an AI-assisted approach for PROTAC molecule design pipeline named LM-PROTAC…

Quantitative Methods · Quantitative Biology 2024-12-16 Jinsong Shao , Qineng Gong , Zeyu Yin , Yu Chen , Yajie Hao , Lei Zhang , Linlin Jiang , Min Yao , Jinlong Li , Fubo Wang , Li Wang

Recent improvements in the predictive quality of natural language processing systems are often dependent on a substantial increase in the number of model parameters. This has led to various attempts of compressing such models, but existing…

Computation and Language · Computer Science 2021-08-12 Guy Rotman , Amir Feder , Roi Reichart

The area under the ROC curve (AUROC) has been vigorously applied for imbalanced classification and moreover combined with deep learning techniques. However, there is no existing work that provides sound information for peers to choose…

Machine Learning · Computer Science 2022-07-06 Dixian Zhu , Xiaodong Wu , Tianbao Yang

The success of deep architectures is at least in part attributed to the layer-by-layer unsupervised pre-training that initializes the network. Various papers have reported extensive empirical analysis focusing on the design and…

Machine Learning · Computer Science 2015-02-13 Vamsi K Ithapu , Sathya Ravi , Vikas Singh

Enzymes and proteins are live driven biochemicals, which has a dramatic impact over the environment, in which it is active. So, therefore, it is highly looked-for to build such a robust and highly accurate automatic and computational model…

Biomolecules · Quantitative Biology 2021-01-11 Zaheer Ullah Khan , Dechang Pi , Izhar Ahmed Khan , Asif Nawaz , Jamil Ahmad , Mushtaq Hussain

Recent advances in pre-training vision-language models like CLIP have shown great potential in learning transferable visual representations. Nonetheless, for downstream inference, CLIP-like models suffer from either 1) degraded accuracy and…

Computer Vision and Pattern Recognition · Computer Science 2022-10-11 Feng Wang , Manling Li , Xudong Lin , Hairong Lv , Alexander G. Schwing , Heng Ji

Unsupervised learning is just at a tipping point where it could really take off. Among these approaches, contrastive learning has seen tremendous progress and led to state-of-the-art performance. In this paper, we construct a novel…

Computer Vision and Pattern Recognition · Computer Science 2021-08-06 Yu Wang , Jingyang Lin , Qi Cai , Yingwei Pan , Ting Yao , Hongyang Chao , Tao Mei

Unsupervised anomaly detection (UAD) alleviates large labeling efforts by training exclusively on unlabeled in-distribution data and detecting outliers as anomalies. Generally, the assumption prevails that large training datasets allow the…

Computer Vision and Pattern Recognition · Computer Science 2024-10-29 Felix Meissen , Johannes Getzner , Alexander Ziller , Özgün Turgut , Georgios Kaissis , Martin J. Menten , Daniel Rueckert

The quantification of uncertainty is important for the adoption of machine learning, especially to reject out-of-distribution (OOD) data back to human experts for review. Yet progress has been slow, as a balance must be struck between…

Machine Learning · Computer Science 2022-09-12 Derek Everett , Andre T. Nguyen , Luke E. Richards , Edward Raff

In grokking, a model first fits the training data while test accuracy remains low, and only later begins to generalize. We ask whether this transition can be localized from observed training trajectories before the test accuracy rises, and…

Machine Learning · Computer Science 2026-05-12 Ziyue Wang , Yufeng Ying , Takafumi Kanamori

When deployed for risk-sensitive tasks, deep neural networks must include an uncertainty estimation mechanism. Here we examine the relationship between deep architectures and their respective training regimes, with their corresponding…

Machine Learning · Computer Science 2023-02-24 Ido Galil , Mohammed Dabbah , Ran El-Yaniv

Prompt optimization is a practical and widely applicable alternative to fine tuning for improving large language model performance. Yet many existing methods evaluate candidate prompts by sampling full outputs, often coupled with self…

Computation and Language · Computer Science 2025-09-19 Chenzhuo Zhao , Ziqian Liu , Xinda Wang , Junting Lu , Chaoyi Ruan

Recent studies have demonstrated significant progress in aligning text-to-image diffusion models with human preference via Reinforcement Learning from Human Feedback. However, while existing methods achieve high scores on automated reward…

Computer Vision and Pattern Recognition · Computer Science 2026-03-11 Chubin Chen , Sujie Hu , Jiashu Zhu , Meiqi Wu , Jintao Chen , Yanxun Li , Nisha Huang , Chengyu Fang , Jiahong Wu , Xiangxiang Chu , Xiu Li

Grokking in transformers trained on algorithmic tasks is characterized by a long delay between training-set fit and abrupt generalization, but the source of that delay remains poorly understood. In encoder-decoder arithmetic models, we…

Machine Learning · Computer Science 2026-04-16 Laura Gomezjurado Gonzalez

We present a new paradigm for fine-tuning large-scale visionlanguage pre-trained models on downstream task, dubbed Prompt Regularization (ProReg). Different from traditional fine-tuning which easily overfits to the downstream task data,…

Computer Vision and Pattern Recognition · Computer Science 2025-08-14 Beier Zhu , Yulei Niu , Saeil Lee , Minhoe Hur , Hanwang Zhang

Research on Knowledge Tracing (KT) models traditionally focuses on improving predictive accuracy. However, responsible real-world deployment requires models to know when to defer uncertain predictions to a human teacher. We introduce an…

Machine Learning · Computer Science 2026-05-04 Joshua Mitton , Prarthana Bhattacharyya , Ralph Abboud , Simon Woodhead

Recent research considers few-shot intent detection as a meta-learning problem: the model is learning to learn from a consecutive set of small tasks named episodes. In this work, we propose ProtAugment, a meta-learning algorithm for short…

Computation and Language · Computer Science 2021-05-28 Thomas Dopierre , Christophe Gravier , Wilfried Logerais

Discrete-action reinforcement learning algorithms often falter in tasks with high-dimensional discrete action spaces due to the vast number of possible actions. A recent advancement leverages value-decomposition, a concept from multi-agent…

Machine Learning · Computer Science 2024-03-11 David Ireland , Giovanni Montana

Radiomics is an active area of research focusing on high throughput feature extraction from medical images with a wide array of applications in clinical practice, such as clinical decision support in oncology. However, noise in low dose…

Quantitative Methods · Quantitative Biology 2021-09-07 Junhua Chen , Inigo Bermejo , Andre Dekker , Leonard Wee

Emerging reasoning models hold promise for automating scientific discovery. However, their training is hindered by a critical supervision gap: experimental outcomes are abundant, whereas intermediate reasoning steps are rarely documented at…

Biomolecules · Quantitative Biology 2026-03-24 Zequn Liu , Kehan Wu , Shufang Xie , Zekun Guo , Wei Zhang , Tao Qin , Renhe Liu , Yingce Xia