Related papers: Beyond Manual Curation: Augmenting Targeted Protei…
Recently, prompt tuning \cite{lester2021power} has gradually become a new paradigm for NLP, which only depends on the representation of the words by freezing the parameters of pre-trained language models (PLMs) to obtain remarkable…
Fine-tuning and inference with large Language Models (LM) are generally known to be expensive. Parameter-efficient fine-tuning over pretrained LMs reduces training memory by updating a small number of LM parameters but does not improve…
Log analysis represents a critical sub-domain within AI applications that facilitates automatic approaches to fault and error management of large-scaled software systems, saving labors of traditional manual methods. While existing solutions…
Augmentation is an effective alternative to utilize the small amount of labeled protein data. However, most of the existing work focuses on design-ing new architectures or pre-training tasks, and relatively little work has studied data…
Extracting MITRE ATT\&CK Tactics, Techniques, and Procedures (TTPs) from natural language threat reports is crucial yet challenging. Existing methods primarily focus on performance metrics using data-driven approaches, often neglecting…
Tool-augmented language agents frequently fail in real-world deployment due to tool malfunctions--timeouts, API exceptions, or inconsistent outputs--triggering cascading reasoning errors and task abandonment. Existing agent training…
The increasing size and complexity of pre-trained language models have demonstrated superior performance in many applications, but they usually require large training datasets to be adequately trained. Insufficient training sets could…
Preservation of domain knowledge from the source to target is crucial in any translation workflow. It is common in the translation industry to receive highly specialized projects, where there is hardly any parallel in-domain data. In such…
Extracting structured information from clinical notes requires navigating a dense web of interdependent variables where the value of one attribute logically constrains others. Existing Large Language Model (LLM)-based extraction pipelines…
Automated Program Repair (APR) agents leverage Large Language Models (LLMs) to autonomously diagnose and fix software bugs through reasoning, planning, and tool use. Despite impressive leaderboard gains on benchmarks such as SWE-bench,…
As artificial intelligence advances, large language models (LLMs) are entering qualitative research workflows, yet no reproducible methods exist for integrating them into established approaches like thematic analysis (TA), one of the most…
Large Language Models (LLMs) often require domain-specific fine-tuning to address targeted tasks, which risks degrading their general capabilities. Maintaining a balance between domain-specific enhancements and general model utility is a…
The design of sustainable materials requires access to materials performance and sustainability data from literature corpus in an organized, structured and automated manner. Natural language processing approaches, particularly large…
Deep learning for tabular data has garnered increasing attention in recent years, yet employing deep models for structured data remains challenging. While these models excel with unstructured data, their efficacy with structured data has…
Data curation is a critical yet under-explored area in large language model (LLM) training. Existing methods, such as data selection and mixing, operate in an offline paradigm, detaching themselves from training. This separation introduces…
Building and deploying machine learning solutions in healthcare remains expensive and labor-intensive due to fragmented preprocessing workflows, model compatibility issues, and stringent data privacy constraints. In this work, we introduce…
The safe deployment of large language models (LLMs) in high-stakes fields like biomedicine, requires them to be able to reason about cause and effect. We investigate this ability by testing 13 open-source LLMs on a fundamental task:…
Large language models (LLMs) have shown promise for scientific data extraction from publications, but rely on manual prompt refinement. We present an expert-grounded automatic prompt optimization framework that enhances LLM entity…
Deep neural-network-based language models (LMs) are increasingly applied to large-scale protein sequence data to predict protein function. However, being largely black-box models and thus challenging to interpret, current protein LM…
In tabular anomaly detection (AD), textual semantics often carry critical signals, as the definition of an anomaly is closely tied to domain-specific context. However, existing benchmarks provide only raw data points without semantic…