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Academic networks in the real world can usually be portrayed as heterogeneous information networks (HINs) with multi-type, universally connected nodes and multi-relationships. Some existing studies for the representation learning of…

Information Retrieval · Computer Science 2022-10-10 Junfu Wang , Yawen Li , Meiyu Liang , Ang Li

Predicting genetic perturbations enables the identification of potentially crucial genes prior to wet-lab experiments, significantly improving overall experimental efficiency. Since genes are the foundation of cellular life, building gene…

Quantitative Methods · Quantitative Biology 2025-05-09 Changxi Chi , Jun Xia , Jingbo Zhou , Jiabei Cheng , Chang Yu , Stan Z. Li

The growing interests and applications of graph learning in diverse domains have propelled the development of a unified model generalizing well across different graphs and tasks, known as the Graph Foundation Model (GFM). Existing research…

Machine Learning · Computer Science 2025-06-17 Trung-Kien Nguyen , Heng Ping , Shixuan Li , Peiyu Zhang , Nikos Kanakaris , Nicholas Kotov , Paul Bogdan

Scene graphs (SGs) represent objects and their relationships as structured graphs, enabling applications in image generation, robotics, and 3D understanding. Recent work suggests that conditioning image generation on scene graphs improves…

Computer Vision and Pattern Recognition · Computer Science 2026-05-12 Rajalaxmi Rajagopalan , Romit Roy Choudhury

Graph neural networks (GNNs) have emerged as the state of the art for a variety of graph-related tasks and have been widely used in Heterogeneous Graphs (HetGs), where meta-paths help encode specific semantics between various node types.…

Machine Learning · Computer Science 2025-02-25 Xuqi Mao , Zhenying He , X. Sean Wang

Automated patent claim validation demands low error tolerance. However, existing approaches face a rigidity-resource dilemma: lightweight encoders cannot track long-range legal dependencies, while exhaustive LLM verification incurs 4-5X…

Computation and Language · Computer Science 2026-05-28 Yongmin Yoo , Qiongkai Xu , Longbing Cao

Applying Large Language Models (LLMs) to heterogeneous enterprise systems is hindered by hallucinations and failures in multi-hop, n-ary reasoning. Existing paradigms (e.g., GraphRAG, NL2SQL) lack the semantic grounding and auditable…

Artificial Intelligence · Computer Science 2026-05-21 Ling Wang , Xin Liu , Songnan Liu , Jianan Wang , Cheng Cheng , Yihan Zhu , Enyu Li , Yu Xiao , Jiangyong Xie , Duogong Yan , Jiangyi Chen

Text-Attributed Graphs (TAGs) enhance graph structures with natural language descriptions, enabling detailed representation of data and their relationships across a broad spectrum of real-world scenarios. Despite the potential for deeper…

Machine Learning · Computer Science 2024-05-28 Zheng Zhang , Yuntong Hu , Bo Pan , Chen Ling , Liang Zhao

Electroencephalography (EEG) classification techniques have been widely studied for human behavior and emotion recognition tasks. But it is still a challenging issue since the data may vary from subject to subject, may change over time for…

Signal Processing · Electrical Eng. & Systems 2020-09-14 Dashan Gao , Ce Ju , Xiguang Wei , Yang Liu , Tianjian Chen , Qiang Yang

Distantly supervised relation extraction intrinsically suffers from noisy labels due to the strong assumption of distant supervision. Most prior works adopt a selective attention mechanism over sentences in a bag to denoise from wrongly…

Computation and Language · Computer Science 2019-11-28 Yang Li , Guodong Long , Tao Shen , Tianyi Zhou , Lina Yao , Huan Huo , Jing Jiang

Recent years have witnessed the emerging success of graph neural networks (GNNs) for modeling structured data. However, most GNNs are designed for homogeneous graphs, in which all nodes and edges belong to the same types, making them…

Machine Learning · Computer Science 2020-03-04 Ziniu Hu , Yuxiao Dong , Kuansan Wang , Yizhou Sun

Convolutional neural networks (CNNs) have demonstrated strong performance in visual recognition tasks, but their inherent reliance on regular grid structures limits their capacity to model complex topological relationships and non-local…

Computer Vision and Pattern Recognition · Computer Science 2025-08-18 Feiyue Zhao , Zhichao Zhang

Heterogeneous information network has been widely used to alleviate sparsity and cold start problems in recommender systems since it can model rich context information in user-item interactions. Graph neural network is able to encode this…

Information Retrieval · Computer Science 2021-06-22 Yifan Wang , Suyao Tang , Yuntong Lei , Weiping Song , Sheng Wang , Ming Zhang

Representing graph data in a low-dimensional space for subsequent tasks is the purpose of attributed graph embedding. Most existing neural network approaches learn latent representations by minimizing reconstruction errors. Rare work…

Machine Learning · Computer Science 2024-01-15 Bozhen Hu , Zelin Zang , Jun Xia , Lirong Wu , Cheng Tan , Stan Z. Li

Long-term memory is becoming a central bottleneck for language agents. Exsting RAG and GraphRAG systems largely treat memory graphs as static retrieval middleware, which limits their ability to recover complete evidence chains from partial…

Artificial Intelligence · Computer Science 2026-05-13 Juntong Wang , Haoyue Zhao , guanghui Pan , Xiyuan Wang , Yanbo Wang , Qiyan Deng , Muhan Zhang

Knowledge graph embedding (KGE), aiming to embed entities and relations into low-dimensional vectors, has attracted wide attention recently. However, the existing research is mainly based on the black-box neural models, which makes it…

Computation and Language · Computer Science 2020-11-13 Xiaoyu Kou , Yankai Lin , Yuntao Li , Jiahao Xu , Peng Li , Jie Zhou , Yan Zhang

Hierarchical Text Classification (HTC), which aims to predict text labels organized in hierarchical space, is a significant task lacking in investigation in natural language processing. Existing methods usually encode the entire…

Computation and Language · Computer Science 2021-09-20 Wei Huang , Chen Liu , Yihua Zhao , Xinyun Yang , Zhaoming Pan , Zhimin Zhang , Guiquan Liu

Graph neural networks (GNNs) face significant challenges with class imbalance, leading to biased inference results. To address this issue in heterogeneous graphs, we propose a novel framework that combines Graph Neural Network (GNN) and…

Machine Learning · Computer Science 2024-11-26 Hung-Chun Hsu , Bo-Jun Wu , Ming-Yi Hong , Che Lin , Chih-Yu Wang

Many real-world heterogeneous graphs exhibit pronounced heterophily, where connected nodes often have dissimilar labels or play different semantic roles. In such settings, standard heterogeneous graph neural networks that aggregate messages…

Machine Learning · Computer Science 2026-05-07 Xinyi Li , Ming Li , Lu Bai , Lixin Cui , Feilong Cao , Ke Lv , Yunliang Jiang , Pietro Liò

Albeit having gained significant progress lately, large-scale graph representation learning remains expensive to train and deploy for two main reasons: (i) the repetitive computation of multi-hop message passing and non-linearity in graph…

Machine Learning · Computer Science 2023-03-10 Zhenshuo Zhang , Yun Zhu , Haizhou Shi , Siliang Tang