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Protein language models often take into consideration the alignment between a protein sequence and its textual description. However, they do not take structural information into consideration. Traditional methods treat sequence and…

Machine Learning · Computer Science 2026-03-10 Aditya Ranganath , Hasin Us Sami , Kowshik Thopalli , Bhavya Kailkhura , Wesam Sakla

Dense retrieval models usually adopt vectors from the last hidden layer of the document encoder to represent a document, which is in contrast to the fact that representations in different layers of a pre-trained language model usually…

Information Retrieval · Computer Science 2025-09-30 Zhongbin Xie , Thomas Lukasiewicz

Many learning problems require predicting sets of objects when the number of objects is not known beforehand. Examples include object detection, molecular modeling, and scientific inference tasks such as astrophysical source detection.…

Machine Learning · Computer Science 2026-01-30 Tin Hadži Veljković , Erik Bekkers , Michael Tiemann , Jan-Willem van de Meent

Do transformers, when trained on sequential reasoning traces, build internal models of the underlying task? And if so, does the structure of those internal representations mirror the structure of the domain? We train an 8-layer transformer…

Machine Learning · Computer Science 2026-05-20 Roman Kniazev , Nathanaël Fijalkow

Recently, deep architectures, such as recurrent and recursive neural networks have been successfully applied to various natural language processing tasks. Inspired by bidirectional recurrent neural networks which use representations that…

Machine Learning · Computer Science 2013-12-03 Ozan İrsoy , Claire Cardie

Due to the explosive growth of large-scale data sets, tensors have been a vital tool to analyze and process high-dimensional data. Different from the matrix case, tensor decomposition has been defined in various formats, which can be…

Optimization and Control · Mathematics 2023-12-27 Rachel Grotheer , Shuang Li , Anna Ma , Deanna Needell , Jing Qin

Pretrained language models have been shown to encode relational information, such as the relations between entities or concepts in knowledge-bases -- (Paris, Capital, France). However, simple relations of this type can often be recovered…

Computer Vision and Pattern Recognition · Computer Science 2021-09-15 Mostafa Abdou , Artur Kulmizev , Daniel Hershcovich , Stella Frank , Ellie Pavlick , Anders Søgaard

We define a tensor product of linear sites, and a resulting tensor product of Grothendieck categories based upon their representations as categories of linear sheaves. We show that our tensor product is a special case of the tensor product…

Category Theory · Mathematics 2017-03-16 Wendy Lowen , Julia Ramos González , Boris Shoikhet

Localized patterns are coherent structures embedded in a quiescent state and occur in both discrete and continuous media across a wide range of applications. While it is well-understood how domain covering patterns (for example stripes and…

Pattern Formation and Solitons · Physics 2025-03-19 Jason J. Bramburger , Dan J. Hill , David J. B. Lloyd

Transformer models underpin many recent advances in practical machine learning applications, yet understanding their internal behavior continues to elude researchers. Given the size and complexity of these models, forming a comprehensive…

Small additive ensembles of symbolic rules offer interpretable prediction models. Traditionally, these ensembles use rule conditions based on conjunctions of simple threshold propositions $x \geq t$ on a single input variable $x$ and…

Machine Learning · Computer Science 2025-06-27 Shahrzad Behzadimanesh , Pierre Le Bodic , Geoffrey I. Webb , Mario Boley

Unsupervised feature learning often finds low-dimensional embeddings that capture the structure of complex data. For tasks for which prior expert topological knowledge is available, incorporating this into the learned representation may…

Machine Learning · Computer Science 2022-03-08 Robin Vandaele , Bo Kang , Jefrey Lijffijt , Tijl De Bie , Yvan Saeys

Theory revision integrates inductive learning and background knowledge by combining training examples with a coarse domain theory to produce a more accurate theory. There are two challenges that theory revision and other theory-guided…

Artificial Intelligence · Computer Science 2008-02-03 S. K. Donoho , L. A. Rendell

Neural models learn representations of high-dimensional data on low-dimensional manifolds. Multiple factors, including stochasticities in the training process, model architectures, and additional inductive biases, may induce different…

Machine Learning · Computer Science 2025-12-02 Hanlin Yu , Berfin Inal , Georgios Arvanitidis , Soren Hauberg , Francesco Locatello , Marco Fumero

Compositional generalization, the ability to recognize familiar parts in novel contexts, is a defining property of intelligent systems. Although modern models are trained on massive datasets, they still cover only a tiny fraction of the…

Computer Vision and Pattern Recognition · Computer Science 2026-03-02 Arnas Uselis , Andrea Dittadi , Seong Joon Oh

Heterogeneous gap among different modalities emerges as one of the critical issues in modern AI problems. Unlike traditional uni-modal cases, where raw features are extracted and directly measured, the heterogeneous nature of cross modal…

Information Retrieval · Computer Science 2015-11-19 Aiwen Jiang , Hanxi Li , Yi Li , Mingwen Wang

Deep learning methods capable of handling relational data have proliferated over the last years. In contrast to traditional relational learning methods that leverage first-order logic for representing such data, these deep learning methods…

Machine Learning · Computer Science 2020-03-25 Sebastijan Dumancic , Tias Guns , Wannes Meert , Hendrik Blockeel

We consider the problem of learning mixtures of generalized linear models (GLM) which arise in classification and regression problems. Typical learning approaches such as expectation maximization (EM) or variational Bayes can get stuck in…

Machine Learning · Computer Science 2016-01-14 Hanie Sedghi , Majid Janzamin , Anima Anandkumar

The problem of how to find a sparse representation of a signal is an important one in applied and computational harmonic analysis. It is closely related to the problem of how to reconstruct a sparse vector from its projection in a much…

Functional Analysis · Mathematics 2018-04-13 Enrico Au-Yeung

When designing new materials, it is often necessary to tailor the material design (with respect to its design parameters) to have some desired properties (e.g. Young's modulus). As the set of design parameters grow, the search space grows…

Machine Learning · Computer Science 2026-02-12 Shaan Pakala , Aldair E. Gongora , Brian Giera , Evangelos E. Papalexakis
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