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Extracting structured information from clinical notes requires navigating a dense web of interdependent variables where the value of one attribute logically constrains others. Existing Large Language Model (LLM)-based extraction pipelines…

Retrieval-Augmented Generation (RAG) enables large language models (LLMs) to access broader knowledge sources, yet factual inconsistencies persist due to noise in retrieved documents-even with advanced retrieval methods. We demonstrate that…

Computation and Language · Computer Science 2025-06-04 Yongjian Li , HaoCheng Chu , Yukun Yan , Zhenghao Liu , Shi Yu , Zheni Zeng , Ruobing Wang , Sen Song , Zhiyuan Liu , Maosong Sun

Human-like large language models (LLMs), especially the most powerful and popular ones in OpenAI's GPT family, have proven to be very helpful for many natural language processing (NLP) related tasks. Therefore, various attempts have been…

Computation and Language · Computer Science 2024-09-11 Ridong Han , Chaohao Yang , Tao Peng , Prayag Tiwari , Xiang Wan , Lu Liu , Benyou Wang

Human-like large language models (LLMs), especially the most powerful and popular ones in OpenAI's GPT family, have proven to be very helpful for many natural language processing (NLP) related tasks. Therefore, various attempts have been…

Computation and Language · Computer Science 2024-09-12 Ridong Han , Chaohao Yang , Tao Peng , Prayag Tiwari , Xiang Wan , Lu Liu , Benyou Wang

Producing output that conforms to a specified JSON schema underlies tool use, structured extraction, and knowledge base construction in modern large language models. Despite this centrality, public datasets for the task remain small,…

Information Retrieval · Computer Science 2026-05-11 William Brach , Francesco Zuppichini , Marco Vinciguerra , Lorenzo Padoan

Named entity recognition (NER) and relation extraction (RE) are two important tasks in information extraction and retrieval (IE \& IR). Recent work has demonstrated that it is beneficial to learn these tasks jointly, which avoids the…

Computation and Language · Computer Science 2020-01-01 John Giorgi , Xindi Wang , Nicola Sahar , Won Young Shin , Gary D. Bader , Bo Wang

Information extraction (IE) is an important task in Natural Language Processing (NLP), involving the extraction of named entities and their relationships from unstructured text. In this paper, we propose a novel approach to this task by…

Computation and Language · Computer Science 2024-04-22 Urchade Zaratiana , Nadi Tomeh , Niama El Khbir , Pierre Holat , Thierry Charnois

Upgrades to advanced scientific user facilities such as next-generation x-ray light sources, nanoscience centers, and neutron facilities are revolutionizing our understanding of materials across the spectrum of the physical sciences, from…

Computational Engineering, Finance, and Science · Computer Science 2023-12-05 Michael H. Prince , Henry Chan , Aikaterini Vriza , Tao Zhou , Varuni K. Sastry , Matthew T. Dearing , Ross J. Harder , Rama K. Vasudevan , Mathew J. Cherukara

Real-world time-series data in industrial sensing, healthcare, and energy systems is often corrupted by a mixture of Gaussian noise and occasional large-magnitude impulse outliers. For tasks that depend on local shape, such as ECG…

Machine Learning · Computer Science 2026-05-26 Yuefeng Liu , Ning Yang , Ziyu Yang

Scientific literature is growing exponentially, creating a critical bottleneck for researchers to efficiently synthesize knowledge. While general-purpose Large Language Models (LLMs) show potential in text processing, they often fail to…

Computation and Language · Computer Science 2025-09-11 Fengyu She , Nan Wang , Hongfei Wu , Ziyi Wan , Jingmian Wang , Chang Wang

The extraction of structured information from raw text is a fundamental component of many NLP applications, including document retrieval, ranking, and relevance estimation. High-quality extractions often require domain-specific accuracy,…

Computation and Language · Computer Science 2026-03-10 Moin Amin-Naseri , Hannah Kim , Estevam Hruschka

As the field of Large Language Models (LLMs) evolves at an accelerated pace, the critical need to assess and monitor their performance emerges. We introduce a benchmarking framework focused on knowledge graph engineering (KGE) accompanied…

Artificial Intelligence · Computer Science 2023-09-01 Lars-Peter Meyer , Johannes Frey , Kurt Junghanns , Felix Brei , Kirill Bulert , Sabine Gründer-Fahrer , Michael Martin

Large language models suffer from knowledge staleness and lack of interpretability due to implicit knowledge storage across entangled network parameters, preventing targeted updates and reasoning transparency. We propose ExplicitLM, a novel…

Artificial Intelligence · Computer Science 2025-11-04 Chengzhang Yu , Zening Lu , Chenyang Zheng , Chiyue Wang , Yiming Zhang , Zhanpeng Jin

Extracting structured data from the web is often a trade-off between the brittle nature of manual heuristics and the prohibitive cost of Large Language Models. We introduce AXE (Adaptive X-Path Extractor), a pipeline that rethinks this…

Computation and Language · Computer Science 2026-04-01 Abdelrahman Mansour , Khaled W. Alshaer , Moataz Elsaban

Span-based joint extraction simultaneously conducts named entity recognition (NER) and relation extraction (RE) in text span form. Recent studies have shown that token labels can convey crucial task-specific information and enrich token…

Computation and Language · Computer Science 2022-07-19 Bin Ji , Shasha Li , Jie Yu , Jun Ma , Huijun Liu

We introduce an advanced information extraction pipeline to automatically process very large collections of unstructured textual data for the purpose of investigative journalism. The pipeline serves as a new input processor for the upcoming…

Computation and Language · Computer Science 2018-09-17 Gregor Wiedemann , Seid Muhie Yimam , Chris Biemann

Recent works in Natural Language Inference (NLI) and related tasks, such as automated fact-checking, employ atomic fact decomposition to enhance interpretability and robustness. For this, existing methods rely on resource-intensive…

Computation and Language · Computer Science 2025-09-24 Nicholas Popovič , Michael Färber

This research was focused on the efficient collection of experimental Metal-Organic Framework (MOF) data from scientific literature to address the challenges of accessing hard-to-find data and improving the quality of information available…

Materials Science · Physics 2024-04-23 Wonseok Lee , Yeonghun Kang , Taeun Bae , Jihan Kim

Metadata extraction is essential for cataloging and preserving datasets, enabling effective research discovery and reproducibility, especially given the current exponential growth in scientific research. While Masader (Alyafeai et al.,2021)…

Computation and Language · Computer Science 2025-09-19 Zaid Alyafeai , Maged S. Al-Shaibani , Bernard Ghanem

A long-running goal of the clinical NLP community is the extraction of important variables trapped in clinical notes. However, roadblocks have included dataset shift from the general domain and a lack of public clinical corpora and…

Computation and Language · Computer Science 2022-12-01 Monica Agrawal , Stefan Hegselmann , Hunter Lang , Yoon Kim , David Sontag