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The standard sparse-autoencoder (SAE) interpretability protocol labels each feature from its top-activating contexts and validates by single-feature steering. We propose the pairwise matrix protocol, co-varying steering coefficient with…

Machine Learning · Computer Science 2026-05-06 Michael A. Riegler , Birk Sebastian Frostelid Torpmann-Hagen

Manifold alignment (MA) involves a set of techniques for learning shared representations across domains, yet many traditional MA methods are incapable of performing out-of-sample extension, limiting their real-world applicability. We…

Machine Learning · Computer Science 2025-09-30 Jake S. Rhodes , Adam G. Rustad , Marshall S. Nielsen , Morgan Chase McClellan , Dallan Gardner , Dawson Hedges

The process of tuning the size of the hidden layers for autoencoders has the benefit of providing optimally compressed representations for the input data. However, such hyper-parameter tuning process would take a lot of computation and time…

Machine Learning · Computer Science 2025-07-08 Sarthak Ketanbhai Modi , Zi Pong Lim , Yushi Cao , Yupeng Cheng , Yon Shin Teo , Shang-Wei Lin

Large Language Models (LLMs) have transformed natural language processing, yet their internal mechanisms remain largely opaque. Recently, mechanistic interpretability has attracted significant attention from the research community as a…

Machine Learning · Computer Science 2025-09-24 Dong Shu , Xuansheng Wu , Haiyan Zhao , Daking Rai , Ziyu Yao , Ninghao Liu , Mengnan Du

Radiological services are experiencing unprecedented demand, leading to increased interest in automating radiology report generation. Existing Vision-Language Models (VLMs) suffer from hallucinations, lack interpretability, and require…

Computer Vision and Pattern Recognition · Computer Science 2024-10-07 Ahmed Abdulaal , Hugo Fry , Nina Montaña-Brown , Ayodeji Ijishakin , Jack Gao , Stephanie Hyland , Daniel C. Alexander , Daniel C. Castro

Sparse autoencoders provide a promising unsupervised approach for extracting interpretable features from a language model by reconstructing activations from a sparse bottleneck layer. Since language models learn many concepts, autoencoders…

Machine Learning · Computer Science 2024-06-07 Leo Gao , Tom Dupré la Tour , Henk Tillman , Gabriel Goh , Rajan Troll , Alec Radford , Ilya Sutskever , Jan Leike , Jeffrey Wu

Variational auto-encoders (VAEs) have proven to be a well suited tool for performing dimensionality reduction by extracting latent variables lying in a potentially much smaller dimensional space than the data. Their ability to capture…

Machine Learning · Statistics 2020-10-23 Clément Chadebec , Clément Mantoux , Stéphanie Allassonnière

Sparse Autoencoders (SAEs) have emerged as a useful tool for interpreting the internal representations of neural networks. However, naively optimising SAEs for reconstruction loss and sparsity results in a preference for SAEs that are…

Machine Learning · Computer Science 2024-10-16 Kola Ayonrinde , Michael T. Pearce , Lee Sharkey

Sparse autoencoders (SAEs) extract human-interpretable features from deep neural networks by transforming their activations into a sparse, higher dimensional latent space, and then reconstructing the activations from these latents.…

Machine Learning · Computer Science 2025-02-13 Gonçalo Paulo , Stepan Shabalin , Nora Belrose

Biological sequence design (DNA, RNA, or peptides) with desired functional properties has applications in discovering novel nanomaterials, biosensors, antimicrobial drugs, and beyond. One common challenge is the ability to optimize complex…

Quantitative Methods · Quantitative Biology 2025-12-17 Elham Sadeghi , Xianqi Deng , I-Hsin Lin , Stacy M. Copp , Petko Bogdanov

I present a Variational Autoencoder (VAE) trained on collider physics data (specifically boosted $W$ jets), with reconstruction error given by an approximation to the Earth Movers Distance (EMD) between input and output jets. This VAE…

High Energy Physics - Phenomenology · Physics 2022-04-20 Jack H. Collins

Variational autoencoders (VAEs) and generative adversarial networks (GANs) enjoy an intuitive connection to manifold learning: in training the decoder/generator is optimized to approximate a homeomorphism between the data distribution and…

Machine Learning · Computer Science 2020-08-28 Henry Li , Ofir Lindenbaum , Xiuyuan Cheng , Alexander Cloninger

Sparse autoencoders (SAEs) improve interpretability in multimodal models, but it remains unclear whether SAE features form modular, composable units for reasoning-an assumption underlying many intervention-based steering methods. We test…

Artificial Intelligence · Computer Science 2026-03-27 Yunpeng Zhou

As large language models (LLMs) grow in scale and capability, understanding their internal mechanisms becomes increasingly critical. Sparse autoencoders (SAEs) have emerged as a key tool in mechanistic interpretability, enabling the…

Computation and Language · Computer Science 2025-06-10 Jiaming Li , Haoran Ye , Yukun Chen , Xinyue Li , Lei Zhang , Hamid Alinejad-Rokny , Jimmy Chih-Hsien Peng , Min Yang

Sparse autoencoders (SAEs) are a promising approach to extracting features from neural networks, enabling model interpretability as well as causal interventions on model internals. SAEs generate sparse feature representations using a…

Machine Learning · Computer Science 2024-11-11 Kola Ayonrinde

Sparse autoencoders (SAEs) are a popular technique for interpreting language model activations, and there is extensive recent work on improving SAE effectiveness. However, most prior work evaluates progress using unsupervised proxy metrics…

Masked Autoencoders (MAEs) have emerged as a powerful pretraining technique for vision foundation models. Despite their effectiveness, they require extensive hyperparameter tuning (masking ratio, patch size, encoder/decoder layers) when…

Computer Vision and Pattern Recognition · Computer Science 2025-08-25 Anthony Bisulco , Rahul Ramesh , Randall Balestriero , Pratik Chaudhari

Sparse Autoencoders (SAEs) are increasingly used to interpret foundation models, but their role as an actionable intervention space remains less understood, especially in vision. We study whether sparse visual features can be used not only…

Computer Vision and Pattern Recognition · Computer Science 2026-05-28 Gerasimos Chatzoudis , Zhuowei Li , Gemma E. Moran , Hao Wang , Dimitris N. Metaxas

We present a probabilistic autoencoder (PAE) framework for galaxy spectral energy distribution (SED) modeling and redshift estimation, applied to synthetic SPHEREx 102-band spectrophotometry. Our PAE learns a compact latent representation…

Instrumentation and Methods for Astrophysics · Physics 2026-03-27 Richard M. Feder , Liam Parker , Uroš Seljak

Text-to-image diffusion models generate images through an iterative denoising process, so internal neural layers produce trajectories of activations rather than single static representations. Sparse autoencoders (SAEs) have recently been…

Computer Vision and Pattern Recognition · Computer Science 2026-05-28 Calvin Yeung , Prathyush Poduval , Ali Zakeri , Zhuowen Zou , Mohsen Imani