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Let G = (V, E) be a directed and weighted graph with vertex set V of size n and edge set E of size m, such that each edge (u, v) \in E has a real-valued weight w(u, c). An arborescence in G is a subgraph T = (V, E') such that for a vertex u…

Data Structures and Algorithms · Computer Science 2023-11-07 Joaquim Espada , Alexandre P. Francisco , Tatiana Rocher , Luís M. S. Russo , Cátia Vaz

Inspired by the recently introduced framework of AND/OR search spaces for graphical models, we propose to augment Multi-Valued Decision Diagrams (MDD) with AND nodes, in order to capture function decomposition structure and to extend these…

Artificial Intelligence · Computer Science 2014-01-16 Robert Mateescu , Rina Dechter , Radu Marinescu

Many data sets, crucial for today's applications, consist essentially of enormous networks, containing millions or even billions of elements. Having the possibility of visualizing such networks is of paramount importance. We propose an…

Data Structures and Algorithms · Computer Science 2023-07-25 Giuseppe Di Battista , Fabrizio Grosso , Silvia Montorselli , Maurizio Patrignani

A dynamic graph algorithm is a data structure that answers queries about a property of the current graph while supporting graph modifications such as edge insertions and deletions. Prior work has shown strong conditional lower bounds for…

Data Structures and Algorithms · Computer Science 2023-01-30 Monika Henzinger , Ami Paz , A. R. Sricharan

Treewidth is a well-known graph invariant with multiple interesting applications in combinatorics. On the practical side, many NP-complete problems are polynomial-time (sometimes even linear-time) solvable on graphs of bounded treewidth. On…

Category Theory · Mathematics 2021-05-13 Zoltan A. Kocsis , Benjamin Merlin Bumpus

We consider the problem of finding a subgraph of a given graph which minimizes the sum of given functions at vertices evaluated at their subgraph degrees. While the problem is NP-hard already when all functions are the same, we show that it…

Combinatorics · Mathematics 2023-05-30 Shmuel Onn

Latent variable models are an elegant framework for capturing rich probabilistic dependencies in many applications. However, current approaches typically parametrize these models using conditional probability tables, and learning relies…

Machine Learning · Computer Science 2012-10-19 Ankur P. Parikh , Le Song , Mariya Ishteva , Gabi Teodoru , Eric P. Xing

We propose a novel method for automatic program synthesis. P-Tree Programming represents the program search space through a single probabilistic prototype tree. From this prototype tree we form program instances which we evaluate on a given…

Artificial Intelligence · Computer Science 2017-07-13 Christian Oesch

Probabilistic programming frameworks are powerful tools for statistical modelling and inference. They are not immediately generalisable to phylogenetic problems due to the particular computational properties of the phylogenetic tree object.…

Populations and Evolution · Quantitative Biology 2022-11-11 Christiaan Swanepoel , Mathieu Fourment , Xiang Ji , Hassan Nasif , Marc A Suchard , Frederick A Matsen , Alexei Drummond

We investigate a structural generalisation of treewidth we call $\mathcal{A}$-blind-treewidth where $\mathcal{A}$ denotes an annotated graph class. This width parameter is defined by evaluating only the size of those bags $B$ of…

Combinatorics · Mathematics 2024-10-03 J. Pascal Gollin , Sebastian Wiederrecht

In evolutionary computation, it is commonly assumed that a search algorithm acquires knowledge about a problem instance by sampling solutions from the search space and evaluating them with a fitness function. This is necessarily inefficient…

Neural and Evolutionary Computing · Computer Science 2024-11-12 Piotr Wyrwiński , Krzysztof Krawiec

We give an analog of the Myhill-Nerode methods from formal language theory for hypergraphs and use it to derive the following results for two NP-hard hypergraph problems: * We provide an algorithm for testing whether a hypergraph has…

Discrete Mathematics · Computer Science 2016-01-12 René van Bevern , Rodney G. Downey , Michael R. Fellows , Serge Gaspers , Frances A. Rosamond

We consider the two problems of predicting links in a dynamic graph sequence and predicting functions defined at each node of the graph. In many applications, the solution of one problem is useful for solving the other. Indeed, if these…

Machine Learning · Computer Science 2012-03-27 Emile Richard , Andreas Argyriou , Theodoros Evgeniou , Nicolas Vayatis

We propose a new methodology to develop heuristic algorithms using tree decompositions. Traditionally, such algorithms construct an optimal solution of the given problem instance through a dynamic programming approach. We modify this…

Data Structures and Algorithms · Computer Science 2023-10-26 Louis Carpentier , Jorik Jooken , Jan Goedgebeur

In this paper, we investigate the $k$-path coloring problem, a variant of vertex coloring arising in the context of integrated circuit manufacturing. In this setting, typical industrial instances exhibit a `tree-like' structure. We exploit…

Discrete Mathematics · Computer Science 2019-04-29 Dehia Ait-Ferhat , Vincent Juliard , Gautier Stauffer , Andres Torres

The treewidth is a structural parameter that measures the tree-likeness of a graph. Many algorithmic and combinatorial results are expressed in terms of the treewidth. In this paper, we study the treewidth of outer $k$-planar graphs, that…

Discrete Mathematics · Computer Science 2025-04-24 Oksana Firman , Grzegorz Gutowski , Myroslav Kryven , Yuto Okada , Alexander Wolff

This article briefly describes four algorithmic problems where the notion of treewidth is very useful. Even though the problems themselves have nothing to do with treewidth, it turns out that combining known results on treewidth allows us…

Data Structures and Algorithms · Computer Science 2020-08-19 Dániel Marx

In this paper, we demonstrate that considering experiments in a graph-theoretic manner allows us to exploit automorphisms of the graph to reduce the number of evaluations of candidate designs for those experiments, and thus find optimal…

Methodology · Statistics 2018-02-28 Ben M. Parker , Steven G Gilmour , Vasiliki Koutra

The problem of deciding the validity (QSAT) of quantified Boolean formulas (QBF) is a vivid research area in both theory and practice. In the field of parameterized algorithmics, the well-studied graph measure treewidth turned out to be a…

Computational Complexity · Computer Science 2020-07-06 Johannes Klaus Fichte , Markus Hecher , Andreas Pfandler

Transformers have revolutionized the field of machine learning. In particular, they can be used to solve complex algorithmic problems, including graph-based tasks. In such algorithmic tasks a key question is what is the minimal size of a…

Machine Learning · Computer Science 2026-01-29 Gilad Yehudai , Clayton Sanford , Maya Bechler-Speicher , Orr Fischer , Ran Gilad-Bachrach , Amir Globerson