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Discovery gene-disease links is important in biology and medicine areas, enabling disease identification and drug repurposing. Machine learning approaches accelerate this process by leveraging biological knowledge represented in ontologies…

Machine Learning · Computer Science 2025-04-14 Catarina Canastra , Cátia Pesquita

Graph Neural Networks have revolutionized many machine learning tasks in recent years, ranging from drug discovery, recommendation systems, image classification, social network analysis to natural language understanding. This paper shows…

Machine Learning · Computer Science 2021-05-14 Faez Ahmed , Yaxin Cui , Yan Fu , Wei Chen

Dynamic link prediction is a research hot in complex networks area, especially for its wide applications in biology, social network, economy and industry. Compared with static link prediction, dynamic one is much more difficult since…

Social and Information Networks · Computer Science 2021-10-05 Jinyin Chen , Xueke Wang , Xuanheng Xu

Link prediction, which consists of predicting edges based on graph features, is a fundamental task in many graph applications. As for several related problems, Graph Neural Networks (GNNs), which are based on an attribute-centric…

Machine Learning · Computer Science 2023-05-24 Zexi Huang , Mert Kosan , Arlei Silva , Ambuj Singh

The paper utilizes the graph embeddings generated for entities of a large biomedical database to perform link prediction to capture various new relationships among different entities. A novel node similarity measure is proposed that…

Information Retrieval · Computer Science 2021-11-01 Prakhar Gurawa , Matthias Nickles

Graph Attention Network (GAT) and GraphSAGE are neural network architectures that operate on graph-structured data and have been widely studied for link prediction and node classification. One challenge raised by GraphSAGE is how to smartly…

Machine Learning · Computer Science 2020-06-09 Anderson de Andrade , Chen Liu

Graph neural networks (GNNs) have brought revolutionary advancements to the field of link prediction (LP), providing powerful tools for mining potential relationships in graphs. However, existing methods face challenges when dealing with…

Machine Learning · Computer Science 2025-12-30 Huashen Lu , Wensheng Gan , Guoting Chen , Zhichao Huang , Philip S. Yu

Link prediction, the problem of identifying missing links among a set of inter-related data entities, is a popular field of research due to its application to graph-like domains. Producing consistent evaluations of the performance of the…

Social and Information Networks · Computer Science 2016-11-28 Dario Garcia-Gasulla , Eduard Ayguadé , Jesús Labarta , Ulises Cortés

Link prediction -- a task of distinguishing actual hidden edges from random unconnected node pairs -- is one of the quintessential tasks in graph machine learning. Despite being widely accepted as a universal benchmark and a downstream task…

Social and Information Networks · Computer Science 2024-05-30 Rachith Aiyappa , Xin Wang , Munjung Kim , Ozgur Can Seckin , Jisung Yoon , Yong-Yeol Ahn , Sadamori Kojaku

To enjoy more social network services, users nowadays are usually involved in multiple online sites at the same time. Aligned social networks provide more information to alleviate the problem of data insufficiency. In this paper, we target…

Social and Information Networks · Computer Science 2019-10-15 Yizhu Jiao , Yun Xiong , Jiawei Zhang , Yangyong Zhu

Knowledge graph reasoning in the fully-inductive setting, where both entities and relations at test time are unseen during training, remains an open challenge. In this work, we introduce GraphOracle, a novel framework that achieves robust…

Machine Learning · Computer Science 2025-12-30 Enjun Du , Siyi Liu , Yongqi Zhang

The task of link prediction for knowledge graphs is to predict missing relationships between entities. Knowledge graph embedding, which aims to represent entities and relations of a knowledge graph as low dimensional vectors in a continuous…

Artificial Intelligence · Computer Science 2022-04-26 Yanhui Peng , Jing Zhang

The graph data structure is a staple in mathematics, yet graph-based machine learning is a relatively green field within the domain of data science. Recent advances in graph-based ML and open source implementations of relevant algorithms…

Machine Learning · Computer Science 2021-04-06 Keenan Venuti

Multi-scale biomedical knowledge networks are expanding with emerging experimental technologies that generates multi-scale biomedical big data. Link prediction is increasingly used especially in bipartite biomedical networks to identify…

Social and Information Networks · Computer Science 2022-02-25 Jinjiang Guo , Jie Li , Dawei Leng , Lurong Pan

A recent focal area in the space of graph neural networks (GNNs) is graph self-supervised learning (SSL), which aims to derive useful node representations without labeled data. Notably, many state-of-the-art graph SSL methods are…

Machine Learning · Computer Science 2023-03-30 William Shiao , Zhichun Guo , Tong Zhao , Evangelos E. Papalexakis , Yozen Liu , Neil Shah

Research on graph representation learning has received great attention in recent years. However, most of the studies so far have focused on the embedding of single-layer graphs. The few studies dealing with the problem of representation…

Machine Learning · Computer Science 2022-06-28 Luca Gallo , Vito Latora , Alfredo Pulvirenti

In this paper, we generally formulate the dynamics prediction problem of various network systems (e.g., the prediction of mobility, traffic and topology) as the temporal link prediction task. Different from conventional techniques of…

Social and Information Networks · Computer Science 2019-01-29 Kai Lei , Meng Qin , Bo Bai , Gong Zhang , Min Yang

We present LinkSAGE, an innovative framework that integrates Graph Neural Networks (GNNs) into large-scale personalized job matching systems, designed to address the complex dynamics of LinkedIns extensive professional network. Our approach…

Link prediction is a crucial research area in knowledge graphs, with many downstream applications. In many real-world scenarios, inductive link prediction is required, where predictions have to be made among unseen entities. Embedding-based…

Machine Learning · Computer Science 2024-07-10 Canlin Zhang , Xiuwen Liu

In this paper, we proposed the \textit{link injection}, a novel method that helps any differentiable graph machine learning models to go beyond observed connections from the input data in an end-to-end learning fashion. It finds out (weak)…

Social and Information Networks · Computer Science 2020-09-10 Jie Bu , M. Maruf , Arka Daw