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Obtaining reliable and precise estimates of wildlife species abundance and distribution is essential for the conservation and management of animal populations and natural reserves. Spatial capture-recapture (SCR) models provide estimates of…

Capture-recapture data are often collected when abundance estimation is of interest. In the presence of unobserved individual heterogeneity, specified on a continuous scale for the capture probabilities, the likelihood is not generally…

Methodology · Statistics 2017-10-13 Ruth King , Brett T. McClintock , Darren Kidney , David Borchers

As human activities intensify, environmental systems such as aquatic ecosystems and water treatment systems face increasingly complex pressures, impacting ecological balance, public health, and sustainable development, making intelligent…

Machine Learning · Computer Science 2025-03-13 Lei Liu , Yuchao Lu , Ling An , Huajie Liang , Chichun Zhou , Zhenyu Zhang

Accurate estimates of microbial species abundances are needed to advance our understanding of the role that microbiomes play in human and environmental health. However, artificially constructed microbiomes demonstrate that intuitive…

Methodology · Statistics 2025-03-17 David S Clausen , Amy D Willis

Abundance estimates from animal point-count surveys require accurate estimates of detection probabilities. The standard model for estimating detection from removal-sampled point-count surveys assumes that organisms at a survey site are…

Populations and Evolution · Quantitative Biology 2019-04-09 Adam Martin-Schwarze , Jarad Niemi , Philip Dixon

Capture-recapture (CRC) surveys are used to estimate the size of a population whose members cannot be enumerated directly. CRC surveys have been used to estimate the number of Covid-19 infections, people who use drugs, sex workers, conflict…

Methodology · Statistics 2022-10-17 Jinghao Sun , Luk Van Baelen , Els Plettinckx , Forrest W. Crawford

To study population dynamics, ecologists and wildlife biologists use relative abundance data, which are often subject to temporal preferential sampling. Temporal preferential sampling occurs when sampling effort varies across time. To…

Methodology · Statistics 2022-12-14 Michael R. Schwob , Mevin B. Hooten , Travis McDevitt-Galles

Camera-traps is a relatively new but already popular instrument in the estimation of abundance of non-identifiable animals. Although camera-traps are convenient in application, there remain both theoretical complications such as spatial…

Quantitative Methods · Quantitative Biology 2017-03-23 Evgeny Ivanko

Monitoring key elements of disease dynamics (e.g., prevalence, case counts) is of great importance in infectious disease prevention and control, as emphasized during the COVID-19 pandemic. To facilitate this effort, we propose a new…

Methodology · Statistics 2024-10-10 Lin Ge , Yuzi Zhang , Lance A. Waller , Robert H. Lyles

Understanding space usage and resource selection is a primary focus of many studies of animal populations. Usually, such studies are based on location data obtained from telemetry, and resource selection functions (RSF) are used for…

Quantitative Methods · Quantitative Biology 2012-07-16 J. Andrew Royle , Richard B. Chandler

The population size ("abundance") of wildlife species has central interest in ecological research and management. Distance sampling is a dominant approach to the estimation of wildlife abundance for many vertebrate animal species. One…

Methodology · Statistics 2025-04-18 Benjamin R. Baer , Len Thomas , Stephen T. Buckland

Capture-recapture methods aim to estimate the size of a closed population on the basis of multiple incomplete enumerations of individuals. In many applications, the individual probability of being recorded is heterogeneous in the…

Methodology · Statistics 2016-06-08 James E. Johndrow , Kristian Lum , Daniel Manrique-Vallier

Capture-recapture studies are widely used to obtain information about abundance (population size or density) of animal populations. A common design is that in which multiple distinct populations are sampled, and the research objective is…

Methodology · Statistics 2012-11-27 J. Andrew Royle , Sarah J. Converse , William A. Link

In a constantly changing world, animals must account for environmental volatility when making decisions. To appropriately discount older, irrelevant information, they need to learn the rate at which the environment changes. We develop an…

Neurons and Cognition · Quantitative Biology 2017-01-12 Adrian E Radillo , Alan Veliz-Cuba , Kresimir Josic , Zachary P Kilpatrick

Causal Temporal Representation Learning (Ctrl) methods aim to identify the temporal causal dynamics of complex nonstationary temporal sequences. Despite the success of existing Ctrl methods, they require either directly observing the domain…

Machine Learning · Computer Science 2024-09-06 Xiangchen Song , Zijian Li , Guangyi Chen , Yujia Zheng , Yewen Fan , Xinshuai Dong , Kun Zhang

The paper describes a new class of capture-recapture models for closed populations when individual covariates are available. The novelty consists in combining a latent class model for the distribution of the capture history, where the class…

Methodology · Statistics 2021-11-08 Antonio Forcina , Francesco Bartolucci

Accurate estimation of wildlife density is vital for effective ecological monitoring, conservation, and management. Line transect sampling, a central technique in distance sampling, relies on selecting an appropriate detection function to…

Methodology · Statistics 2025-07-16 Midhat M. Edous , Omar M. Eidous

With the internet, a massive amount of information on species abundance can be collected under citizen science programs. However, these data are often difficult to use directly in statistical inference, as their collection is generally…

Applications · Statistics 2015-02-27 Christophe Giraud , Clément Calenge , Camille Coron , Romain Julliard

As noninvasive sampling techniques for animal populations have become more popular, there has been increasing interest in the development of capture-recapture models that can accommodate both imperfect detection and misidentification of…

Quantitative Methods · Quantitative Biology 2015-02-04 Brett T. McClintock , Larissa L. Bailey , Brian P. Dreher , William A. Link

Uses of underwater videos to assess diversity and abundance of fish are being rapidly adopted by marine biologists. Manual processing of videos for quantification by human analysts is time and labour intensive. Automatic processing of…

Computer Vision and Pattern Recognition · Computer Science 2018-07-17 Ranju Mandal , Rod M. Connolly , Thomas A. Schlacherz , Bela Stantic
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