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We introduce ellipsoidal filtration, a novel method for persistent homology, and demonstrate its effectiveness in denoising recurrent signals. Unlike standard Rips filtrations, which use isotropic neighbourhoods and ignore the signal's…

Computational Geometry · Computer Science 2025-10-21 Omer Bahadir Eryilmaz , Cihan Katar , Max A. Little

Persistent homology is a mathematical tool used for studying the shape of data by extracting its topological features. It has gained popularity in network science due to its applicability in various network mining problems, including…

Algebraic Topology · Mathematics 2023-06-21 Mehmet Emin Aktas , Thu Nguyen , Rakin Riza , Muhammad Ifte Islam , Esra Akbas

When classical particle filtering algorithms are used for maximum likelihood parameter estimation in nonlinear state-space models, a key challenge is that estimates of the likelihood function and its derivatives are inherently noisy. The…

Computation · Statistics 2017-11-30 Andreas Svensson , Fredrik Lindsten , Thomas B. Schön

The design of fluid channel structures of reactors or separators of chemical processes is key to enhancing the mass transfer processes inside the devices. However, the systematic design of channel topological structures is difficult for…

Fluid Dynamics · Physics 2025-03-07 Chenhui Kou , Yuhui Yin , Min Zhu , Shengkun Jia , Yiqing Luo , Xigang Yuana , Lu Lu

One of the primary areas of interest in applied algebraic topology is persistent homology, and, more specifically, the persistence diagram. Persistence diagrams have also become objects of interest in topological data analysis. However,…

Methodology · Statistics 2018-04-06 Eric Berry , Yen-Chi Chen , Jessi Cisewski-Kehe , Brittany Terese Fasy

We present maps classifying regions of the sky according to their information gain potential as quantified by the Fisher information. These maps can guide the optimal retrieval of relevant physical information with targeted cosmological…

Cosmology and Nongalactic Astrophysics · Physics 2022-01-26 Andrija Kostić , Jens Jasche , Doogesh Kodi Ramanah , Guilhem Lavaux

Topological data analysis (TDA) is a rising field in the intersection of mathematics, statistics, and computer science/data science. The cornerstone of TDA is persistent homology, which produces a summary of topological information called a…

Computational Geometry · Computer Science 2022-05-24 Yu-Min Chung , Michael Hull , Austin Lawson , Neil Pritchard

This paper presents state estimation and stochastic optimal control gathered in one global optimization problem generating dual effect i.e. the control can improve the future estimation. As the optimal policy is impossible to compute, a…

Optimization and Control · Mathematics 2023-03-27 Emilien Flayac , Karim Dahia , Bruno Hérissé , Frédéric Jean

We propose PLLay, a novel topological layer for general deep learning models based on persistence landscapes, in which we can efficiently exploit the underlying topological features of the input data structure. In this work, we show…

Machine Learning · Computer Science 2021-01-19 Kwangho Kim , Jisu Kim , Manzil Zaheer , Joon Sik Kim , Frederic Chazal , Larry Wasserman

Recurrent signals give rise to trajectories that repeatedly return close to earlier states in state space. Many analysis methods therefore require a principled notion of similarity between states. In practice, a recurrence threshold sets…

Computational Geometry · Computer Science 2026-03-25 Omer Bahadir Eryilmaz , Cihan Katar , Max A. Little

Reservoir computing is a popular approach to design recurrent neural networks, due to its training simplicity and approximation performance. The recurrent part of these networks is not trained (e.g., via gradient descent), making them…

Neural and Evolutionary Computing · Computer Science 2021-02-15 Pietro Verzelli , Cesare Alippi , Lorenzo Livi , Peter Tino

Persistent homology is a topological feature used in a variety of applications such as generating features for data analysis and penalizing optimization problems. We develop an approach to accelerate persistent homology computations…

Algebraic Topology · Mathematics 2023-01-19 Yuan Luo , Bradley J. Nelson

Persistent homology is a cornerstone of topological data analysis, offering a multiscale summary of topology with robustness to nuisance transformations, such as rotations and small deformations. Persistent homology has seen broad use…

Methodology · Statistics 2025-11-19 Zitian Wu , Arkaprava Roy , Leo L. Duan

Many dynamical systems are difficult or impossible to model using high fidelity physics based models. Consequently, researchers are relying more on data driven models to make predictions and forecasts. Based on limited training data,…

Chaotic Dynamics · Physics 2025-04-09 Max M. Chumley , Firas A. Khasawneh

A key step in any scanning-based asset creation workflow is to convert unordered point clouds to a surface. Classical methods (e.g., Poisson reconstruction) start to degrade in the presence of noisy and partial scans. Hence, deep learning…

Computer Vision and Pattern Recognition · Computer Science 2024-02-14 Philipp Erler , Paul Guerrero , Stefan Ohrhallinger , Michael Wimmer , Niloy J. Mitra

The best way to combine the results of deep learning with standard 3D reconstruction pipelines remains an open problem. While systems that pass the output of traditional multi-view stereo approaches to a network for regularisation or…

Computer Vision and Pattern Recognition · Computer Science 2022-07-28 Tristan Laidlow , Jan Czarnowski , Andrea Nicastro , Ronald Clark , Stefan Leutenegger

Graph embeddings play a critical role in graph representation learning, allowing machine learning models to explore and interpret graph-structured data. However, existing methods often rely on opaque, high-dimensional embeddings, limiting…

Machine Learning · Computer Science 2025-11-26 Astrit Tola , Funmilola Mary Taiwo , Cuneyt Gurcan Akcora , Baris Coskunuzer

Recurrent neural networks have a strong inductive bias towards learning temporally compressed representations, as the entire history of a sequence is represented by a single vector. By contrast, Transformers have little inductive bias…

Machine Learning · Computer Science 2022-10-26 Aniket Didolkar , Kshitij Gupta , Anirudh Goyal , Nitesh B. Gundavarapu , Alex Lamb , Nan Rosemary Ke , Yoshua Bengio

In many statistical applications that concern mathematical psychologists, the concept of Fisher information plays an important role. In this tutorial we clarify the concept of Fisher information as it manifests itself across three different…

Statistics Theory · Mathematics 2017-10-18 Alexander Ly , Maarten Marsman , Josine Verhagen , Raoul Grasman , Eric-Jan Wagenmakers

Obtaining system parameters and reconstructing the full flow state from limited velocity observations using conventional fluid dynamics solvers can be prohibitively expensive. Here we employ machine learning algorithms to overcome the…

Fluid Dynamics · Physics 2024-10-17 Vladimir Parfenyev , Mark Blumenau , Ilia Nikitin