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Hierarchical clustering is a class of algorithms that seeks to build a hierarchy of clusters. It has been the dominant approach to constructing embedded classification schemes since it outputs dendrograms, which capture the hierarchical…

Machine Learning · Statistics 2018-08-28 Xiaofei Ma , Satya Dhavala

One of the main challenges for hierarchical clustering is how to appropriately identify the representative points in the lower level of the cluster tree, which are going to be utilized as the roots in the higher level of the cluster tree…

Machine Learning · Statistics 2021-11-16 Wen-Bo Xie , Zhen Liu , Jaideep Srivastava

Partial orders and directed acyclic graphs are commonly recurring data structures that arise naturally in numerous domains and applications and are used to represent ordered relations between entities in the domains. Examples are task…

Machine Learning · Computer Science 2021-12-21 Daniel Bakkelund

This work proposes a hierarchical clustering algorithm for high-dimensional datasets using the cyclic space of reversible finite cellular automata. In cellular automaton (CA) based clustering, if two objects belong to the same cycle, they…

Formal Languages and Automata Theory · Computer Science 2024-08-06 Baby C. J. , Kamalika Bhattacharjee

Hierarchical clustering is a stronger extension of one of today's most influential unsupervised learning methods: clustering. The goal of this method is to create a hierarchy of clusters, thus constructing cluster evolutionary history and…

Data Structures and Algorithms · Computer Science 2021-01-14 MohammadTaghi Hajiaghayi , Marina Knittel

The identification of repeating patterns in discrete grids is rudimentary within symbolic reasoning, algorithm synthesis and structural optimization across diverse computational domains. Although statistical approaches targeting noisy data…

Computer Vision and Pattern Recognition · Computer Science 2026-03-03 Sushish Baral , Paulo Garcia , Warisa Sritriratanarak

We present a new way to summarize and select mixture models via the hierarchical clustering tree (dendrogram) constructed from an overfitted latent mixing measure. Our proposed method bridges agglomerative hierarchical clustering and…

Methodology · Statistics 2024-03-11 Dat Do , Linh Do , Scott A. McKinley , Jonathan Terhorst , XuanLong Nguyen

Attribute-missing graph clustering has emerged as a significant unsupervised task, where only attribute vectors of partial nodes are available and the graph structure is intact. The related models generally follow the two-step paradigm of…

Machine Learning · Computer Science 2025-10-30 Mulin Chen , Bocheng Wang , Jiaxin Zhong , Zongcheng Miao , Xuelong Li

Clustering algorithms have significantly improved along with Deep Neural Networks which provide effective representation of data. Existing methods are built upon deep autoencoder and self-training process that leverages the distribution of…

Computer Vision and Pattern Recognition · Computer Science 2021-09-17 Xin Ma , Won Hwa Kim

Phylogenetic inference can potentially result in a more accurate tree using data from multiple loci. However, if the loci are incongruent--due to events such as incomplete lineage sorting or horizontal gene transfer--it can be misleading to…

Populations and Evolution · Quantitative Biology 2016-03-10 Kevin Gori , Tomasz Suchan , Nadir Alvarez , Nick Goldman , Christophe Dessimoz

In this work, we introduce a novel methodology for divisive hierarchical clustering. Our divisive (``top-down'') approach is motivated by the fact that agglomerative hierarchical clustering (``bottom-up''), which is commonly used for…

Methodology · Statistics 2025-10-07 Jan O. Bauer

Inspired by the human ability to learn and organize knowledge into hierarchical taxonomies with prototypes, this paper addresses key limitations in current deep hierarchical clustering methods. Existing methods often tie the structure to…

Computer Vision and Pattern Recognition · Computer Science 2025-10-01 Zekun Wang , Ethan Haarer , Tianyi Zhu , Zhiyi Dai , Christopher J. MacLellan

Classification and clustering have been studied separately in machine learning and computer vision. Inspired by the recent success of deep learning models in solving various vision problems (e.g., object recognition, semantic segmentation)…

Machine Learning · Computer Science 2017-12-13 Ali Borji , Aysegul Dundar

We propose a new anytime hierarchical clustering method that iteratively transforms an arbitrary initial hierarchy on the configuration of measurements along a sequence of trees we prove for a fixed data set must terminate in a chain of…

Machine Learning · Statistics 2014-04-15 Omur Arslan , Daniel E. Koditschek

Clustering is a fundamental analysis tool aiming at classifying data points into groups based on their similarity or distance. It has found successful applications in all natural and social sciences, including biology, physics, economics,…

Information Retrieval · Computer Science 2021-02-24 Wen-Bo Xie , Yan-Li Lee , Cong Wang , Duan-Bing Chen , Tao Zhou

While clustering is ubiquitously used across science and industry, uncertainty in cluster assignments is rarely quantified with rigorous guarantees. We propose a novel conformal inference framework for clustering that returns confidence…

Methodology · Statistics 2026-04-13 YoonHaeng Hur , Anirban Nath , Genevera Allen

There is a growing interest in characterizing circular data found in biological systems. Such data are wide ranging and varied, from signal phase in neural recordings to nucleotide sequences in round genomes. Traditional clustering…

Machine Learning · Computer Science 2023-09-19 Xiaoxiao Sun , Paul Sajda

This paper describes a design that can be used for Explainable AI. The lower level is a nested ensemble of patterns created by self-organisation. The upper level is a hierarchical tree, where nodes are linked through individual concepts, so…

Artificial Intelligence · Computer Science 2020-11-30 Kieran Greer

While there has been much interest in adapting conventional clustering procedures---and in higher dimensions, persistent homology methods---to directed networks, little is known about the convergence of such methods. In order to even…

Computational Geometry · Computer Science 2022-12-20 Samir Chowdhury , Facundo Mémoli

Clustering is often used for discovering structure in data. Clustering systems differ in the objective function used to evaluate clustering quality and the control strategy used to search the space of clusterings. Ideally, the search…

Artificial Intelligence · Computer Science 2014-11-17 D. Fisher
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