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Graph classification aims to extract accurate information from graph-structured data for classification and is becoming more and more important in graph learning community. Although Graph Neural Networks (GNNs) have been successfully…

Machine Learning · Computer Science 2020-06-24 Ning Ma , Jiajun Bu , Jieyu Yang , Zhen Zhang , Chengwei Yao , Zhi Yu , Sheng Zhou , Xifeng Yan

Biomedical named entity recognition (NER) presents unique challenges due to specialized vocabularies, the sheer volume of entities, and the continuous emergence of novel entities. Traditional NER models, constrained by fixed taxonomies and…

Computation and Language · Computer Science 2025-05-22 Anthony Yazdani , Ihor Stepanov , Douglas Teodoro

Entity alignment (EA) plays an important role in automatically integrating knowledge graphs (KGs) from multiple sources. Recent approaches based on Graph Neural Network (GNN) obtain entity representation from relation information and have…

Computation and Language · Computer Science 2021-10-26 Xueyuan Lin , Haihong E , Wenyu Song , Haoran Luo

Most research in reading comprehension has focused on answering questions based on individual documents or even single paragraphs. We introduce a neural model which integrates and reasons relying on information spread within documents and…

Computation and Language · Computer Science 2022-09-28 Nicola De Cao , Wilker Aziz , Ivan Titov

Knowledge graph entity typing aims to infer entities' missing types in knowledge graphs which is an important but under-explored issue. This paper proposes a novel method for this task by utilizing entities' contextual information.…

Computation and Language · Computer Science 2021-09-17 Weiran Pan , Wei Wei , Xian-Ling Mao

Automated single-cell annotation is difficult when the most abundant genes are not the most discriminative ones, or when a target state is poorly covered by a fixed reference atlas. GPTCelltype-style one-shot prompting allows large language…

Quantitative Methods · Quantitative Biology 2026-05-08 Yehui Yang , Zelin Zang , Xienan Zheng , Yuzhe Jia , Changxi Chi , Jingbo Zhou , Chang Yu , Jinlin Wu , Fuji Yang , Jiebo Luo , Zhen Lei , Stan Z. Li

Large Language Models (LLMs) have demonstrated strong capabilities in web search and reasoning. However, their dependence on static training corpora makes them prone to factual errors and knowledge gaps. Retrieval-Augmented Generation (RAG)…

Artificial Intelligence · Computer Science 2026-01-26 Jiasheng Xu , Mingda Li , Yongqiang Tang , Peijie Wang , Wensheng Zhang

Graph-based Retrieval-Augmented Generation (GraphRAG) has become the important paradigm for enhancing Large Language Models (LLMs) with external knowledge. However, existing approaches are constrained by their reliance on high-quality…

Computation and Language · Computer Science 2026-01-07 Xiaojun Wu , Cehao Yang , Xueyuan Lin , Chengjin Xu , Xuhui Jiang , Yuanliang Sun , Hui Xiong , Jia Li , Jian Guo

Entity Alignment (EA) has attracted widespread attention in both academia and industry, which aims to seek entities with same meanings from different Knowledge Graphs (KGs). There are substantial multi-step relation paths between entities…

Computation and Language · Computer Science 2022-08-09 Weishan Cai , Wenjun Ma , Jieyu Zhan , Yuncheng Jiang

Inductive knowledge graph completion (KGC) aims to predict missing triples with unseen entities. Recent works focus on modeling reasoning paths between the head and tail entity as direct supporting evidence. However, these methods depend…

Artificial Intelligence · Computer Science 2024-12-30 Muzhi Li , Cehao Yang , Chengjin Xu , Zixing Song , Xuhui Jiang , Jian Guo , Ho-fung Leung , Irwin King

One of the key problems in Retrieval-augmented generation (RAG) systems is that chunk-based retrieval pipelines represent the source chunks as atomic objects, mixing the information contained within such a chunk into a single vector. These…

Dependency graph, as a heterogeneous graph representing the intrinsic relationships between different pairs of system entities, is essential to many data analysis applications, such as root cause diagnosis, intrusion detection, etc. Given a…

Artificial Intelligence · Computer Science 2017-08-29 Chen Luo , Zhengzhang Chen , Lu-An Tang , Anshumali Shrivastava , Zhichun Li

Knowledge graph entity typing (KGET) aims at inferring plausible types of entities in knowledge graphs. Existing approaches to KGET focus on how to better encode the knowledge provided by the neighbors and types of an entity into its…

Computation and Language · Computer Science 2023-10-19 Zhiwei Hu , Víctor Gutiérrez-Basulto , Zhiliang Xiang , Ru Li , Jeff Z. Pan

In recent years, heterogeneous graph few-shot learning has been proposed to address the label sparsity issue in heterogeneous graphs (HGs), which contain various types of nodes and edges. The existing methods have achieved good performance…

Machine Learning · Computer Science 2023-08-11 Pengfei Ding , Yan Wang , Guanfeng Liu

In the era of Large Language Models (LLMs), Retrieval-Augmented Generation (RAG) architectures are gaining significant attention for their ability to ground language generation in reliable knowledge sources. Despite their effectiveness, RAG…

Information Retrieval · Computer Science 2026-05-11 Francesco Granata , Francesco Poggi , Misael Mongiovì

Humans inherently recognize objects via selective visual perception, transform specific regions from the visual field into structured symbolic knowledge, and reason their relationships among regions based on the allocation of limited…

Computer Vision and Pattern Recognition · Computer Science 2023-10-03 Shu Zhao , Huijuan Xu

The use of retrieval-augmented generation (RAG) to retrieve relevant information from an external knowledge source enables large language models (LLMs) to answer questions over private and/or previously unseen document collections. However,…

With the development of foundation models such as large language models, zero-shot transfer learning has become increasingly significant. This is highlighted by the generative capabilities of NLP models like GPT-4, and the retrieval-based…

Machine Learning · Computer Science 2024-06-25 Yuhan Li , Peisong Wang , Zhixun Li , Jeffrey Xu Yu , Jia Li

Background : Knowledge is evolving over time, often as a result of new discoveries or changes in the adopted methods of reasoning. Also, new facts or evidence may become available, leading to new understandings of complex phenomena. This is…

Computation and Language · Computer Science 2023-04-24 Ayoub Harnoune , Maryem Rhanoui , Mounia Mikram , Siham Yousfi , Zineb Elkaimbillah , Bouchra El Asri

We present a novel graph neural network (GNN) architecture for retrieval-augmented generation (RAG) that leverages query-aware attention mechanisms and learned scoring heads to improve retrieval accuracy on complex, multi-hop questions.…

Information Retrieval · Computer Science 2025-08-11 Vibhor Agrawal , Fay Wang , Rishi Puri