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Discharge Summaries are documents written by medical professionals that detail a patient's visit to a care facility. They contain a wealth of information crucial for patient care, and automating their generation could significantly reduce…

Computation and Language · Computer Science 2025-12-09 Tiago Rodrigues , Carla Teixeira Lopes

Although recent advances in scaling large language models (LLMs) have resulted in improvements on many NLP tasks, it remains unclear whether these models trained primarily with general web text are the right tool in highly specialized,…

Medical concept extraction from electronic health records underpins many downstream applications, yet remains challenging because medically meaningful concepts are frequently implied rather than explicitly stated in medical narratives.…

Computation and Language · Computer Science 2026-05-21 Zhichao Yang , Gregory D. Lyng , Sanjit Singh Batra , Robert E. Tillman

Large Language Models (LLMs) are often proposed as tools to streamline clinical documentation, a task viewed as both high-volume and low-risk. However, even seemingly straightforward applications of LLMs raise complex sociotechnical…

Human-Computer Interaction · Computer Science 2025-09-05 Kristina L. Kupferschmidt , Kieran O'Doherty , Joshua A. Skorburg

Large Language Models (LLMs) have demonstrated remarkable proficiency in automated text annotation within natural language processing. However, their deployment in clinical settings is severely constrained by strict privacy regulations and…

Recent advancement in large language models (LLMs) has offered a strong potential for natural language systems to process informal language. A representative form of informal language is slang, used commonly in daily conversations and…

Computation and Language · Computer Science 2024-04-16 Zhewei Sun , Qian Hu , Rahul Gupta , Richard Zemel , Yang Xu

Systematic reviews are crucial for evidence-based medicine as they comprehensively analyse published research findings on specific questions. Conducting such reviews is often resource- and time-intensive, especially in the screening phase,…

Information Retrieval · Computer Science 2024-02-02 Shuai Wang , Harrisen Scells , Shengyao Zhuang , Martin Potthast , Bevan Koopman , Guido Zuccon

Clinical document classification is essential for converting unstructured medical texts into standardised ICD-10 diagnoses, yet it faces challenges due to complex medical language, privacy constraints, and limited annotated datasets. Large…

Computation and Language · Computer Science 2026-02-03 Akram Mustafa , Usman Naseem , Mostafa Rahimi Azghadi

The adoption of large language models (LLMs) to assist clinicians has attracted remarkable attention. Existing works mainly adopt the close-ended question-answering (QA) task with answer options for evaluation. However, many clinical…

Identifying relevant text spans is important for several downstream tasks in NLP, as it contributes to model explainability. While most span identification approaches rely on relatively smaller pre-trained language models like BERT, a few…

Computation and Language · Computer Science 2026-01-05 Alphaeus Dmonte , Roland Oruche , Tharindu Ranasinghe , Marcos Zampieri , Prasad Calyam

Transforming unstructured text into structured and meaningful forms, organized by useful category labels, is a fundamental step in text mining for downstream analysis and application. However, most existing methods for producing label…

Large-scale Multi-label Text Classification (LMTC) has a wide range of Natural Language Processing (NLP) applications and presents interesting challenges. First, not all labels are well represented in the training set, due to the very large…

Computation and Language · Computer Science 2020-10-06 Ilias Chalkidis , Manos Fergadiotis , Sotiris Kotitsas , Prodromos Malakasiotis , Nikolaos Aletras , Ion Androutsopoulos

We address the task of evidence retrieval for long document question answering, which involves locating relevant paragraphs within a document to answer a question. We aim to assess the applicability of large language models (LLMs) in the…

Computation and Language · Computer Science 2023-11-23 Inderjeet Nair , Shwetha Somasundaram , Apoorv Saxena , Koustava Goswami

Background: Structured information extraction from unstructured histopathology reports facilitates data accessibility for clinical research. Manual extraction by experts is time-consuming and expensive, limiting scalability. Large language…

Medical documentation, including discharge notes, is crucial for ensuring patient care quality, continuity, and effective medical communication. However, the manual creation of these documents is not only time-consuming but also prone to…

Computation and Language · Computer Science 2024-04-09 HyoJe Jung , Yunha Kim , Heejung Choi , Hyeram Seo , Minkyoung Kim , JiYe Han , Gaeun Kee , Seohyun Park , Soyoung Ko , Byeolhee Kim , Suyeon Kim , Tae Joon Jun , Young-Hak Kim

Clinical decision support systems require models that are not only highly accurate but also equitable and sensitive to the implications of missed diagnoses. In this study, we introduce a knowledge-guided in-context learning (ICL) framework…

Machine Learning · Computer Science 2025-07-28 Fatemeh Nazary , Yashar Deldjoo , Tommaso Di Noia , Eugenio di Sciascio

In this study, we aim to address the task of assertion detection when extracting medical concepts from clinical notes, a key process in clinical natural language processing (NLP). Assertion detection in clinical NLP usually involves…

Computation and Language · Computer Science 2024-02-01 Yuelyu Ji , Zeshui Yu , Yanshan Wang

Analyzing vast textual data and summarizing key information from electronic health records imposes a substantial burden on how clinicians allocate their time. Although large language models (LLMs) have shown promise in natural language…

Large language models (LLMs) achieve strong performance across many natural language processing tasks, yet their decision processes remain difficult to interpret. This lack of transparency creates challenges for trust, debugging, and…

Computation and Language · Computer Science 2026-04-20 Venkata Abhinandan Kancharla

Supervised learning relies on high-quality labeled data, but obtaining such data through human annotation is both expensive and time-consuming. Recent work explores using large language models (LLMs) for annotation, but LLM-generated labels…

Machine Learning · Computer Science 2026-03-23 Lequan Lin , Dai Shi , Andi Han , Feng Chen , Qiuzheng Chen , Jiawen Li , Zhaoyang Li , Jiyuan Li , Zhenbang Sun , Junbin Gao