English
Related papers

Related papers: TCRTransBench: A Comprehensive Benchmark for Bidir…

200 papers

Randomized controlled trials (RCTs) represent the paramount evidence of clinical medicine. Using machines to interpret the massive amount of RCTs has the potential of aiding clinical decision-making. We propose a RCT conclusion generation…

Computation and Language · Computer Science 2019-10-04 Alexander Te-Wei Shieh , Yung-Sung Chuang , Shang-Yu Su , Yun-Nung Chen

Multi-label text classification (MLTC) aims to assign multiple labels to each sample in the dataset. The labels usually have internal correlations. However, traditional methods tend to ignore the correlations between labels. In order to…

Computation and Language · Computer Science 2018-09-11 Pengcheng Yang , Shuming Ma , Yi Zhang , Junyang Lin , Qi Su , Xu Sun

Specification-guided reinforcement learning (RL) provides a principled framework for encoding complex, temporally extended tasks using formal specifications such as linear temporal logic (LTL). While recent methods have shown promising…

Machine Learning · Computer Science 2026-04-28 Zijian Guo , İlker Işık , H. M. Sabbir Ahmad , Wenchao Li

Peer review is the quality assessment of a manuscript by one or more peer experts. Papers are submitted by the authors to scientific venues, and these papers must be reviewed by peers or other authors. The meta-reviewers then gather the…

As LLM agents are increasingly built around reusable skills, a central challenge is no longer only whether agents can use provided skills, but whether they can generate correct, reusable, and executable skills from repositories and…

Artificial Intelligence · Computer Science 2026-05-19 Yifan Zhou , Zhentao Zhang , Ziming Cheng , Shuo Zhang , Qizhen Lan , Zhangquan Chen , Zhi Yang , QianyuXu , Ronghao Chen , Huacan Wang , Sen Hu

Click-through rate (CTR) Prediction is a crucial task in personalized information retrievals, such as industrial recommender systems, online advertising, and web search. Most existing CTR Prediction models utilize explicit feature…

Information Retrieval · Computer Science 2024-02-19 Honghao Li , Lei Sang , Yi Zhang , Xuyun Zhang , Yiwen Zhang

An accurate binding affinity prediction between T-cell receptors and epitopes contributes decisively to develop successful immunotherapy strategies. Some state-of-the-art computational methods implement deep learning techniques by…

Machine Learning · Computer Science 2024-01-18 Etienne Goffinet , Raghvendra Mall , Ankita Singh , Rahul Kaushik , Filippo Castiglione

Personalized vaccines and T-cell immunotherapies depend critically on identifying peptide-MHC class I (pMHC-I) interactions capable of eliciting potent immune responses. However, current benchmarks and models inherit biases present in…

Quantitative Methods · Quantitative Biology 2025-08-22 Sergio Mares , Ariel Espinoza Weinberger , Nilah M. Ioannidis

With the advent of convolutional neural networks~(CNN), supervised learning methods are increasingly being used for whole brain segmentation. However, a large, manually annotated training dataset of labeled brain images required to train…

Computer Vision and Pattern Recognition · Computer Science 2019-03-05 Amod Jog , Andrew Hoopes , Douglas N. Greve , Koen Van Leemput , Bruce Fischl

The growing interest in Temporal Graph Neural Networks (TGNNs) stems from their ability to model complex dynamics and deliver superior performance. However, TGNNs encounter fundamental challenges in capturing long-term dependencies and…

Machine Learning · Computer Science 2026-05-26 Hongjiang Chen , Pengfei Jiao , Ming Du , Xuan Guo , Zhidong Zhao , Di Jin , Xiao Liu

Long non-coding RNA, microRNA, and messenger RNA enable key regulations of various biological processes through a variety of diverse interaction mechanisms. Identifying the interactions and cross-talk between these heterogeneous RNA classes…

Molecular Networks · Quantitative Biology 2020-12-10 Nhat Tran , Jean Gao

The large-scale deployment of personalized healthcare agents demands memory mechanisms that are exceptionally precise, safe, and capable of long-term clinical tracking. However, existing benchmarks primarily focus on daily open-domain…

Artificial Intelligence · Computer Science 2026-05-13 Yihao Wang , Haoran Xu , Renjie Gu , Yixuan Ye , Xinyi Chen , Xinyu Mu , Yuan Gao , Chunxiao Guo , Peng Wei , Jinjie Gu , Huan Li , Ke Chen , Lidan Shou

The Genomic Foundation Model (GFM) paradigm is expected to facilitate the extraction of generalizable representations from massive genomic data, thereby enabling their application across a spectrum of downstream applications. Despite…

Genomics · Quantitative Biology 2024-06-06 Zicheng Liu , Jiahui Li , Siyuan Li , Zelin Zang , Cheng Tan , Yufei Huang , Yajing Bai , Stan Z. Li

Prediction of complete step-by-step chemical reaction mechanisms (CRMs) remains a major challenge. Whereas the traditional approaches in CRM tasks rely on expert-driven experiments or costly quantum chemical computations, contemporary deep…

Chemical Physics · Physics 2025-12-11 Manajit Das , Ajnabiul Hoque , Mayank Baranwal , Raghavan B. Sunoj

Modern well-performing approaches to neural decoding are based on machine learning models such as decision tree ensembles and deep neural networks. The wide range of algorithms that can be utilized to learn from neural spike trains, which…

Neurons and Cognition · Quantitative Biology 2023-01-30 Ivan Lazarevich , Ilya Prokin , Boris Gutkin , Victor Kazantsev

Recent methods in text-to-3D leverage powerful pretrained diffusion models to optimize NeRF. Notably, these methods are able to produce high-quality 3D scenes without training on 3D data. Due to the open-ended nature of the task, most…

Computer Vision and Pattern Recognition · Computer Science 2024-04-18 Yuze He , Yushi Bai , Matthieu Lin , Wang Zhao , Yubin Hu , Jenny Sheng , Ran Yi , Juanzi Li , Yong-Jin Liu

In exploring Predictive Health Management (PHM) strategies for Proton Exchange Membrane Fuel Cells (PEMFC), the Transformer model, widely used in data-driven approaches, excels in many fields but struggles with time series analysis due to…

Machine Learning · Computer Science 2025-04-15 Zezhi Tang , Xiaoyu Chen , Xin Jin , Benyuan Zhang , Wenyu Liang

Human-centric perceptions include a variety of vision tasks, which have widespread industrial applications, including surveillance, autonomous driving, and the metaverse. It is desirable to have a general pretrain model for versatile…

Computer Vision and Pattern Recognition · Computer Science 2023-03-13 Shixiang Tang , Cheng Chen , Qingsong Xie , Meilin Chen , Yizhou Wang , Yuanzheng Ci , Lei Bai , Feng Zhu , Haiyang Yang , Li Yi , Rui Zhao , Wanli Ouyang

We introduce TreeMeshGPT, an autoregressive Transformer designed to generate high-quality artistic meshes aligned with input point clouds. Instead of the conventional next-token prediction in autoregressive Transformer, we propose a novel…

Graphics · Computer Science 2025-03-17 Stefan Lionar , Jiabin Liang , Gim Hee Lee

In modern electronic manufacturing, defect detection on Printed Circuit Boards (PCBs) plays a critical role in ensuring product yield and maintaining the reliability of downstream assembly processes. However, existing methods often suffer…

Computer Vision and Pattern Recognition · Computer Science 2025-07-08 Jiangzhong Cao , Huanqi Wu , Xu Zhang , Lianghong Tan , Huan Zhang