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Evolution of genetic code is studied as the change in the choice of enzymes that are used to synthesize amino acids from the genetic information of nucleic acids. We propose the following theory: the differentiation of physiological states…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 H. Takagi , K. Kaneko , T. Yomo

Cooperation is a major factor in the evolution of human societies. The structure of human social networks, which affects the dynamics of cooperation and other interpersonal phenomena, have common structural signatures. One of these…

Social and Information Networks · Computer Science 2018-07-10 Babak Fotouhi , Naghmeh Momeni , Benjamin Allen , Martin A. Nowak

Evolutionary multitasking has recently emerged as a novel paradigm that enables the similarities and/or latent complementarities (if present) between distinct optimization tasks to be exploited in an autonomous manner simply by solving them…

Neural and Evolutionary Computing · Computer Science 2016-07-20 Abhishek Gupta , Yew-Soon Ong

Disentangling the mechanisms underlying the social network evolution is one of social science's unsolved puzzles. Preferential attachment is a powerful mechanism explaining social network dynamics, yet not able to explain all scaling-laws…

Social and Information Networks · Computer Science 2014-09-19 Yang Yang , Yuxiao Dong , Nitesh V. Chawla

Technology is increasingly shaping our social structures and is becoming a driving force in altering human biology. Besides, human activities already proved to have a significant impact on the Earth system which in turn generates complex…

Computers and Society · Computer Science 2018-02-15 Eugenio Maria Battaglia , Jie Mei , Guillaume Dumas

The process of evolutionary diversification unfolds in a vast genotypic space of potential outcomes. During the past century there have been remarkable advances in the development of theory for this diversification, and the theory's success…

Populations and Evolution · Quantitative Biology 2011-10-14 Troy Day

Research in cultural evolution aims at providing causal explanations for the change of culture over time. Over the past decades, this field has generated an important body of knowledge, using experimental, historical, and computational…

Machine learning models often perform poorly on subgroups that are underrepresented in the training data. Yet, little is understood on the variation in mechanisms that cause subpopulation shifts, and how algorithms generalize across such…

Machine Learning · Computer Science 2023-08-21 Yuzhe Yang , Haoran Zhang , Dina Katabi , Marzyeh Ghassemi

Species-rich communities, such as the microbiota or microbial ecosystems, provide key functions for human health and climatic resilience. Increasing effort is being dedicated to design experimental protocols for selecting community-level…

Populations and Evolution · Quantitative Biology 2023-06-22 Jules Fraboul , Giulio Biroli , Silvia De Monte

Gas clumps formed within massive gravitationally unstable circumstellar discs are potential seeds of gas giant planets, brown dwarfs and companion stars. Simulations show that competition between three processes -- migration, gas accretion…

Earth and Planetary Astrophysics · Physics 2019-05-01 Mark Fletcher , Sergei Nayakshin , Dimitris Stamatellos , Walter Dehnen , Farzana Meru , Lucio Mayer , Hongping Deng , Ken Rice

This chapter investigates the evolutionary ecology of software, focusing on the symbiotic relationship between software and innovation. An interplay between constraints, tinkering, and frequency-dependent selection drives the complex…

Software Engineering · Computer Science 2025-12-03 Sergi Valverde , Blai Vidiella , Salva Duran-Nebreda

The possibility that evolutionary forces -- together with a few fundamental factors such as thermodynamic constraints, specific computational features enabling information processing, and ecological processes -- might constrain the logic of…

Biological Physics · Physics 2025-12-30 Manlio De Domenico

There is an intrinsic relationship between the molecular evolution in primordial period and the properties of genomes and proteomes of contemporary species. The genomic data may help us understand the driving force of evolution of life at…

Genomics · Quantitative Biology 2009-11-25 Dirson Jian Li , Shengli Zhang

Genetic variation in a population can sometimes arise so fast as to modify ecosystem dynamics. Such phenomena have been observed in natural predator-prey systems, and characterized in the laboratory as showing unusual phase relationships in…

Populations and Evolution · Quantitative Biology 2025-03-25 Hong-Yan Shih , Nigel Goldenfeld

Evolutionary complexity is here measured by the number of trials/evaluations needed for evolving a logical gate in a non-linear medium. Behavioural complexity of the gates evolved is characterised in terms of cellular automata behaviour. We…

Neural and Evolutionary Computing · Computer Science 2010-11-23 Andy Adamatzky , Larry Bull

Cooperation is a widespread natural phenomenon yet current evolutionary thinking is dominated by the paradigm of selfish competition. Recent advanced in many fronts of Biology and Non-linear Physics are helping to bring cooperation to its…

Populations and Evolution · Quantitative Biology 2014-06-13 Octavio Miramontes , Og DeSouza

The evolution of complexity has been a central theme for Biology [2] and Artificial Life research [1]. It is generally agreed that complexity has increased in our universe, giving way to life, multi-cellularity, societies, and systems of…

Populations and Evolution · Quantitative Biology 2011-09-06 Carlos Gershenson , Tom Lenaerts

This paper investigates how often the popular configurations of Differential Evolution generate solutions outside the feasible domain. Following previous publications in the field, we argue that what the algorithm does with such solutions…

Neural and Evolutionary Computing · Computer Science 2022-01-19 Anna V. Kononova , Fabio Caraffini , Thomas Bäck

We introduce the concept of an abstract evolution system, which provides a convenient framework for studying generic mathematical structures and their properties. Roughly speaking, an evolution system is a category endowed with a selected…

Logic · Mathematics 2024-08-13 Wiesław Kubiś , Paulina Radecka

Research in Artificial Intelligence is breaking technology barriers every day. New algorithms and high performance computing are making things possible which we could only have imagined earlier. Though the enhancements in AI are making life…