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Brain decoding is a field of computational neuroscience that uses measurable brain activity to infer mental states or internal representations of perceptual inputs. Therefore, we propose a novel approach to brain decoding that also relies…

Computer Vision and Pattern Recognition · Computer Science 2023-03-23 Matteo Ferrante , Tommaso Boccato , Nicola Toschi

This paper introduces a clustering framework for networks with nodes annotated with time-series data. The framework addresses all types of network-clustering problems: State clustering, node clustering within states (a.k.a. topology…

Machine Learning · Computer Science 2020-02-25 Cong Ye , Konstantinos Slavakis , Pratik V. Patil , Johan Nakuci , Sarah F. Muldoon , John Medaglia

A universal unanswered question in neuroscience and machine learning is whether computers can decode the patterns of the human brain. Multi-Voxels Pattern Analysis (MVPA) is a critical tool for addressing this question. However, there are…

Machine Learning · Statistics 2016-09-06 Muhammad Yousefnezhad , Daoqiang Zhang

Structural causal models (SCMs) allow us to investigate complex systems at multiple levels of resolution. The causal abstraction (CA) framework formalizes the mapping between high- and low-level SCMs. We address CA learning in a challenging…

Machine Learning · Computer Science 2025-06-03 Gabriele D'Acunto , Fabio Massimo Zennaro , Yorgos Felekis , Paolo Di Lorenzo

Brain surface-based image registration, an important component of brain image analysis, establishes spatial correspondence between cortical surfaces. Existing iterative and learning-based approaches focus on accurate registration of folding…

Image and Video Processing · Electrical Eng. & Systems 2023-10-18 Jian Li , Greta Tuckute , Evelina Fedorenko , Brian L. Edlow , Bruce Fischl , Adrian V. Dalca

Various new brain-computer interface technologies or neuroscience applications require decoding stimulus-following neural responses to natural stimuli such as speech and video from, e.g., electroencephalography (EEG) signals. In this…

Signal Processing · Electrical Eng. & Systems 2024-08-01 Simon Geirnaert , Yuanyuan Yao , Tom Francart , Alexander Bertrand

The cognitive framework of conceptual spaces proposes to represent concepts as regions in psychological similarity spaces. These similarity spaces are typically obtained through multidimensional scaling (MDS), which converts human…

Machine Learning · Computer Science 2020-04-08 Lucas Bechberger , Kai-Uwe Kühnberger

Compared to image representation based on low-level local descriptors, deep neural activations of Convolutional Neural Networks (CNNs) are richer in mid-level representation, but poorer in geometric invariance properties. In this paper, we…

Computer Vision and Pattern Recognition · Computer Science 2015-06-12 Donggeun Yoo , Sunggyun Park , Joon-Young Lee , In So Kweon

We study lower bounds on adaptive sensing algorithms for recovering low rank matrices using linear measurements. Given an $n \times n$ matrix $A$, a general linear measurement $S(A)$, for an $n \times n$ matrix $S$, is just the inner…

Data Structures and Algorithms · Computer Science 2024-02-21 Praneeth Kacham , David P Woodruff

To study information processing in the brain, neuroscientists manipulate experimental stimuli while recording participant brain activity. They can then use encoding models to find out which brain "zone" (e.g. which region of interest,…

Neurons and Cognition · Quantitative Biology 2022-02-22 Mariya Toneva , Jennifer Williams , Anand Bollu , Christoph Dann , Leila Wehbe

Neural Cellular Automata (NCA) represent a powerful framework for modeling biological self-organization, extending classical rule-based systems with trainable, differentiable (or evolvable) update rules that capture the adaptive…

Artificial Intelligence · Computer Science 2025-09-16 Benedikt Hartl , Michael Levin , Léo Pio-Lopez

Adaptive deep brain stimulation (aDBS) has emerged as a promising treatment for Parkinson disease (PD). In aDBS, a surgically placed electrode sends dynamically altered stimuli to the brain based on neurophysiological feedback: an invasive…

Neurons and Cognition · Quantitative Biology 2025-05-16 Ekaterina Kuzmina , Dmitrii Kriukov , Mikhail Lebedev , Dmitry V. Dylov

We propose an active learning algorithm for linear system identification with optimal centered noise excitation. Notably, our algorithm, based on ordinary least squares and semidefinite programming, attains the minimal sample complexity…

Optimization and Control · Mathematics 2026-04-08 Kaito Ito , Alexandre Proutiere

Biological brains have the capability to adaptively coordinate relevant neuronal populations based on the task context to learn continuously changing tasks in real-world environments. However, existing spiking neural network-based continual…

Neural and Evolutionary Computing · Computer Science 2024-11-12 Bing Han , Feifei Zhao , Yang Li , Qingqun Kong , Xianqi Li , Yi Zeng

In this study we adopt predictive modelling to identify simultaneously commonalities and differences in multi-modal brain networks acquired within subjects. Typically, predictive modelling of functional connectomes from structural…

Neurons and Cognition · Quantitative Biology 2019-11-06 Fani Deligianni , Jonathan D. Clayden , Guang-Zhong Yang

The simulation of human neurons and neurotransmission mechanisms has been realized in deep neural networks based on the theoretical implementations of activation functions. However, recent studies have reported that the threshold potential…

Machine Learning · Computer Science 2023-05-11 Kyungsu Lee , Jaeseung Yang , Haeyun Lee , Jae Youn Hwang

We investigate the sparse functional identification of complex cells and the decoding of visual stimuli encoded by an ensemble of complex cells. The reconstruction algorithm of both temporal and spatio-temporal stimuli is formulated as a…

Neurons and Cognition · Quantitative Biology 2017-06-20 Aurel A. Lazar , Nikul H. Ukani , Yiyin Zhou

This paper investigates contextual word representation models from the lens of similarity analysis. Given a collection of trained models, we measure the similarity of their internal representations and attention. Critically, these models…

Computation and Language · Computer Science 2020-05-05 John M. Wu , Yonatan Belinkov , Hassan Sajjad , Nadir Durrani , Fahim Dalvi , James Glass

The vulnerability to adversarial perturbations is a major flaw of Deep Neural Networks (DNNs) that raises question about their reliability when in real-world scenarios. On the other hand, human perception, which DNNs are supposed to…

Machine Learning · Computer Science 2023-08-09 Muhammad Ahmed Shah , Bhiksha Raj

In brain-computer interface or neuroscience applications, generalized canonical correlation analysis (GCCA) is often used to extract correlated signal components in the neural activity of different subjects attending to the same stimulus.…

Signal Processing · Electrical Eng. & Systems 2023-02-17 Simon Geirnaert , Tom Francart , Alexander Bertrand
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