Related papers: MedStruct-S: A Benchmark for Key Discovery, Key-Co…
While Large Language Models (LLMs) achieve expert-level performance on standard medical benchmarks through single-hop factual recall, they severely struggle with the complex, multi-hop diagnostic reasoning required in real-world clinical…
Knowledge Graph (KG) contains entities and the relations between entities. Due to its representation ability, KG has been successfully applied to support many medical/healthcare tasks. However, in the medical domain, knowledge holds under…
In this paper, we propose a novel mutual consistency network (MC-Net+) to effectively exploit the unlabeled data for semi-supervised medical image segmentation. The MC-Net+ model is motivated by the observation that deep models trained with…
Structured Outputs from current LLMs exhibit sporadic errors, hindering enterprise AI deployment. We present CONSTRUCT, a real-time uncertainty estimator that scores the trustworthiness of LLM Structured Outputs. Lower-scoring outputs are…
The fundamental process of evidence extraction and synthesis in evidence-based medicine involves extracting PICO (Population, Intervention, Comparison, and Outcome) elements from biomedical literature. However, Outcomes, being the most…
Foundation models trained on patient electronic health records (EHRs) require tokenizing medical data into sequences of discrete vocabulary items. Existing tokenizers treat medical codes from EHRs as isolated textual tokens. However, each…
This technical report introduces a Named Clinical Entity Recognition Benchmark for evaluating language models in healthcare, addressing the crucial natural language processing (NLP) task of extracting structured information from clinical…
Document Layout analysis (DLA), is the process by which a page is parsed into meaningful elements, often using machine learning models. Typically, the quality of a model is judged using general object detection metrics such as IoU, F1 or…
Clinical value set authoring -- the task of identifying all codes in a standardized vocabulary that define a clinical concept -- is a recurring bottleneck in clinical quality measurement and phenotyping. A natural approach is to prompt a…
This paper addresses the problem of extracting keyphrases from scientific articles and categorizing them as corresponding to a task, process, or material. We cast the problem as sequence tagging and introduce semi-supervised methods to a…
Medical quality control indicators are essential to assess the qualifications of healthcare institutions for medical services. With the impressive performance of large language models (LLMs) like GPT-4 in the medical field, leveraging these…
Large Multimodal Models (LMMs) have demonstrated impressive performance in recognizing document images with natural language instructions. However, it remains unclear to what extent capabilities in literacy with rich structure and…
This paper proposes a deep learning-based method to identify the segments of a clinical note corresponding to ICD-9 broad categories which are further color-coded with respect to 17 ICD-9 categories. The proposed Medical Segment Colorer…
Healthcare data are generated in many different formats, which makes it difficult to integrate and reuse across institutions and studies. Standardisation is required to enable consistent large-scale analysis. The OMOP-CDM, developed by the…
Objective: This study introduces ChatSchema, an effective method for extracting and structuring information from unstructured data in medical paper reports using a combination of Large Multimodal Models (LMMs) and Optical Character…
Argument structure extraction (ASE) aims to identify the discourse structure of arguments within documents. Previous research has demonstrated that contextual information is crucial for developing an effective ASE model. However, we observe…
Background: Electronic health records (EHRs) enable machine learning for diagnosis, prognosis, and clinical decision support. However, EHR standards vary by country and hospital, making records often incompatible. This limits large-scale…
Retinal image quality assessment (RIQA) supports computer-aided diagnosis of eye diseases. However, most tools classify only overall image quality, without indicating acquisition defects to guide recapture. This gap is mainly due to the…
Recent advances in the healthcare industry have led to an abundance of unstructured data, making it challenging to perform tasks such as efficient and accurate information retrieval at scale. Our work offers an all-in-one scalable solution…
Objective: Medical relations are the core components of medical knowledge graphs that are needed for healthcare artificial intelligence. However, the requirement of expert annotation by conventional algorithm development processes creates a…