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Genotype-to-phenotype mappings translate genotypic variations such as mutations into phenotypic changes. Neutrality is the observation that some mutations do not lead to phenotypic changes. Studying the search trajectories in genotypic and…

Populations and Evolution · Quantitative Biology 2023-06-26 Ting Hu , Gabriela Ochoa , Wolfgang Banzhaf

In this paper, we present Language Model as Visual Explainer LVX, a systematic approach for interpreting the internal workings of vision models using a tree-structured linguistic explanation, without the need for model training. Central to…

Computer Vision and Pattern Recognition · Computer Science 2024-12-12 Xingyi Yang , Xinchao Wang

Large Language Models (LLMs) have taken the field of AI by storm, but their adoption in the field of Artificial Life (ALife) has been, so far, relatively reserved. In this work we investigate the potential synergies between LLMs and ALife,…

In mathematical phylogenetics, evolutionary relationships are often represented by trees and networks. The latter are typically used whenever the relationships cannot be adequately described by a tree, which happens when so-called…

Populations and Evolution · Quantitative Biology 2025-12-05 Mirko Wilde , Mareike Fischer

Feature transformation aims to reconstruct the feature space of raw features to enhance the performance of downstream models. However, the exponential growth in the combinations of features and operations poses a challenge, making it…

Machine Learning · Computer Science 2024-12-19 Nanxu Gong , Chandan K. Reddy , Wangyang Ying , Haifeng Chen , Yanjie Fu

While large language models (LLMs) have demonstrated strong capability in structured prediction tasks such as semantic parsing, few amounts of research have explored the underlying mechanisms of their success. Our work studies different…

Computation and Language · Computer Science 2023-02-01 Daking Rai , Yilun Zhou , Bailin Wang , Ziyu Yao

Large Language Models (LLMs) have achieved impressive results in processing text data, which has sparked interest in applying these models beyond textual data, such as graphs. In the field of graph learning, there is a growing interest in…

Artificial Intelligence · Computer Science 2024-10-10 Sheng Ouyang , Yulan Hu , Ge Chen , Yong Liu

Though large language models (LLMs) have enabled great success across a wide variety of tasks, they still appear to fall short of one of the loftier goals of artificial intelligence research: creating an artificial system that can adapt its…

Computation and Language · Computer Science 2026-05-04 Michael A. Lepori , Tal Linzen , Ann Yuan , Katja Filippova

Large language models (LLMs) are a class of artificial intelligence models based on deep learning, which have great performance in various tasks, especially in natural language processing (NLP). Large language models typically consist of…

Quantitative Methods · Quantitative Biology 2025-02-04 Jiajia Liu , Mengyuan Yang , Yankai Yu , Haixia Xu , Tiangang Wang , Kang Li , Xiaobo Zhou

In the rapidly evolving field of Explainable Natural Language Processing (NLP), textual explanations, i.e., human-like rationales, are pivotal for explaining model predictions and enriching datasets with interpretable labels. Traditional…

Computation and Language · Computer Science 2025-11-12 Mahdi Dhaini , Juraj Vladika , Ege Erdogan , Zineb Attaoui , Gjergji Kasneci

Reward models (RMs) play a critical role in enhancing the reasoning performance of LLMs. For example, they can provide training signals to finetune LLMs during reinforcement learning (RL) and help select the best answer from multiple…

Computation and Language · Computer Science 2025-10-06 Qiyuan Liu , Hao Xu , Xuhong Chen , Wei Chen , Yee Whye Teh , Ning Miao

We have only limited understanding of how and why large language models (LLMs) respond in the ways that they do. Their neural networks have proven challenging to interpret, and we are only beginning to tease out the function of individual…

Computation and Language · Computer Science 2025-11-12 Dillon Plunkett , Adam Morris , Keerthi Reddy , Jorge Morales

The process by which Large Language Models (LLMs) acquire complex capabilities during training remains a key open question in mechanistic interpretability. This project investigates whether these learning dynamics can be characterized…

Machine Learning · Computer Science 2025-09-22 Elisabetta Rocchetti

This paper presents an exploratory study that harnesses the capabilities of large language models (LLMs) to mine key ecological entities from invasion biology literature. Specifically, we focus on extracting species names, their locations,…

Computation and Language · Computer Science 2025-01-31 Jennifer D'Souza , Zachary Laubach , Tarek Al Mustafa , Sina Zarrieß , Robert Frühstückl , Phyllis Illari

Large language models (LLMs) process and predict sequences containing text to answer questions, and address tasks including document summarization, providing recommendations, writing software and solving quantitative problems. We provide a…

Numerical Analysis · Mathematics 2026-02-02 Ricardo Baptista , Andrew Stuart , Son Tran

Learning representations of neural network weights given a model zoo is an emerging and challenging area with many potential applications from model inspection, to neural architecture search or knowledge distillation. Recently, an…

Machine Learning · Computer Science 2022-09-30 Konstantin Schürholt , Boris Knyazev , Xavier Giró-i-Nieto , Damian Borth

Large language models (LLMs) have enabled the development of numerous specialized, task-specific variants. However, the maintenance and deployment of these individual models present substantial challenges in terms of resource utilization…

Machine Learning · Computer Science 2024-11-04 Quy-Anh Dang , Chris Ngo

Associative learning--forming links between co-occurring items--is fundamental to human cognition, reshaping internal representations in complex ways. Testing hypotheses on how representational changes occur in biological systems is…

Machine Learning · Computer Science 2025-10-27 Camila Kolling , Vy Ai Vo , Mariya Toneva

Reasoning-oriented large language models (RLMs) achieve strong gains on tasks such as mathematics and coding by generating explicit intermediate reasoning. However, their impact on machine translation (MT) remains underexplored. We…

Computation and Language · Computer Science 2026-02-17 Sara Rajaee , Sebastian Vincent , Alexandre Berard , Marzieh Fadaee , Kelly Marchisio , Tom Kocmi

The growing trend of Large Language Models (LLM) development has attracted significant attention, with models for various applications emerging consistently. However, the combined application of Large Language Models with semantic…

Computation and Language · Computer Science 2023-05-09 Milena Trajanoska , Riste Stojanov , Dimitar Trajanov
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