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This article serves to concisely review the link between gradient flow systems on hypergraphs and information geometry which has been established within the last five years. Gradient flow systems describe a wealth of physical phenomena and…

Statistical Mechanics · Physics 2025-11-03 Dimitri Loutchko , Keisuke Sugie , Tetsuya J Kobayashi

Metric graphs are ubiquitous in science and engineering. For example, many data are drawn from hidden spaces that are graph-like, such as the cosmic web. A metric graph offers one of the simplest yet still meaningful ways to represent the…

Computational Geometry · Computer Science 2017-12-05 Tamal K. Dey , Dayu Shi , Yusu Wang

Starting from the working hypothesis that both physics and the corresponding mathematics have to be described by means of discrete concepts on the Planck-scale, one of the many problems one has to face in this enterprise is to find the…

High Energy Physics - Theory · Physics 2010-05-12 Thomas Nowotny , Manfred Requardt

Recent works have shown that physics-inspired architectures allow the training of deep graph neural networks (GNNs) without oversmoothing. The role of these physics is unclear, however, with successful examples of both reversible (e.g.,…

Machine Learning · Computer Science 2023-12-22 Anthony Gruber , Kookjin Lee , Nathaniel Trask

Many scientific problems require to process data in the form of geometric graphs. Unlike generic graph data, geometric graphs exhibit symmetries of translations, rotations, and/or reflections. Researchers have leveraged such inductive bias…

Machine Learning · Computer Science 2022-02-23 Jiaqi Han , Yu Rong , Tingyang Xu , Wenbing Huang

We present Graph Random Neural Features (GRNF), a novel embedding method from graph-structured data to real vectors based on a family of graph neural networks. The embedding naturally deals with graph isomorphism and preserves the metric…

Machine Learning · Computer Science 2020-06-03 Daniele Zambon , Cesare Alippi , Lorenzo Livi

Topological defects (e.g. pentagons, heptagons and pentagon-heptagon pairs) have been widely observed in large scale graphene and have been recognized to play important roles in tailoring the mechanical and physical properties of…

Mesoscale and Nanoscale Physics · Physics 2018-03-02 Bo Ni , Teng Zhang , Jiaoyan Li , Xiaoyan Li , Huajian Gao

Understanding the dynamic processes of the glassy system continues to be challenging. Recent advances have shown the power of graph neural networks (GNNs) for determining the correlation between structure and dynamics in the glassy system.…

Disordered Systems and Neural Networks · Physics 2023-10-18 Xiao Jiang , Zean Tian , Kenli Li

The following questions are germane to our understanding of gauge-(in)variant quantities and physical possibility: how are gauge transformations and spacetime diffeomorphisms understood as symmetries, in which ways are they similar, and in…

History and Philosophy of Physics · Physics 2022-10-28 Henrique Gomes

A graphon satisfies the $H$-property if graphs sampled from it contain a Hamiltonian decomposition almost surely, which in turn implies that the corresponding network topologies are, e.g., structurally stable and structurally ensemble…

Optimization and Control · Mathematics 2024-02-16 Mohamed-Ali Belabbas , Xudong Chen

Graph isomorphism is a problem for which there is no known polynomial-time solution. Nevertheless, assessing (dis)similarity between two or more networks is a key task in many areas, such as image recognition, biology, chemistry, computer…

Computation · Statistics 2022-06-28 Pierre Miasnikof , Alexander Y. Shestopaloff , Cristián Bravo , Yuri Lawryshyn

Can we learn the differential equations governing the evolution of a temporal network? We investigate this within Random Dot Product Graphs (RDPGs), where each network snapshot is generated from latent positions evolving under unknown…

Methodology · Statistics 2026-03-09 Giulio Valentino Dalla Riva

Graph is an abstract representation commonly used to model networked systems and structure. In problems across various fields, including computer vision and pattern recognition, and neuroscience, graphs are often brought into comparison (a…

Optimization and Control · Mathematics 2022-03-04 Quoc Van Tran , Hyo-Sung Ahn

We consider the problem of estimating the topology of multiple networks from nodal observations, where these networks are assumed to be drawn from the same (unknown) random graph model. We adopt a graphon as our random graph model, which is…

Machine Learning · Statistics 2022-02-14 Madeline Navarro , Santiago Segarra

Exchangeable random graphs, which include some of the most widely studied network models, have emerged as the mainstay of statistical network analysis in recent years. Graphons, which are the central objects in graph limit theory, provide a…

Statistics Theory · Mathematics 2024-09-17 Anirban Chatterjee , Soham Dan , Bhaswar B. Bhattacharya

Graphs are one of the most important data structures for representing pairwise relations between objects. Specifically, a graph embedded in a Euclidean space is essential to solving real problems, such as physical simulations. A crucial…

Machine Learning · Computer Science 2021-03-11 Masanobu Horie , Naoki Morita , Toshiaki Hishinuma , Yu Ihara , Naoto Mitsume

Graphons, short for graph functions, are limiting objects for sequences of large, finite graphs with respect to the so-called cut metric. In this expository piece, we define graphons, motivate them, and discuss how they complete the space…

Combinatorics · Mathematics 2016-11-03 Daniel Glasscock

Statistical analysis of a graph often starts with embedding, the process of representing its nodes as points in space. How to choose the embedding dimension is a nuanced decision in practice, but in theory a notion of true dimension is…

Machine Learning · Statistics 2021-01-06 Patrick Rubin-Delanchy

Dirichlet-to-Neumann maps enable the coupling of multiphysics simulations across computational subdomains by ensuring continuity of state variables and fluxes at artificial interfaces. We present a novel method for learning…

Machine Learning · Computer Science 2026-01-27 Adrienne M. Propp , Jonas A. Actor , Elise Walker , Houman Owhadi , Nathaniel Trask , Daniel M. Tartakovsky

Metric graphs are meaningful objects for modeling complex structures that arise in many real-world applications, such as road networks, river systems, earthquake faults, blood vessels, and filamentary structures in galaxies. To study metric…

Algebraic Topology · Mathematics 2018-12-14 Ellen Gasparovic , Maria Gommel , Emilie Purvine , Radmila Sazdanovic , Bei Wang , Yusu Wang , Lori Ziegelmeier
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