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Related papers: Pretraining on Sleep Data Improves non-Sleep Biosi…

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In this research, we attempt to answer the following basic research questions: Is a machine learning model able to classify all types of sleep disorders with high accuracy? Among the different modalities of sleep disorder signals, are some…

Signal Processing · Electrical Eng. & Systems 2022-04-15 Dylan Zhuang , Ivey Rao , Ali K Ibrahim

Pretraining DNA language models (DNALMs) on the full human genome is resource-intensive, yet often considered necessary for strong downstream performance. Inspired by recent findings in NLP and long-context modeling, we explore an…

Genomics · Quantitative Biology 2025-06-24 Sohan Mupparapu , Parameswari Krishnamurthy , Ratish Puduppully

Modeling effective representations using multiple views that positively influence each other is challenging, and the existing methods perform poorly on Electroencephalogram (EEG) signals for sleep-staging tasks. In this paper, we propose a…

Automated Sleep stage classification using raw single channel EEG is a critical tool for sleep quality assessment and disorder diagnosis. However, modelling the complexity and variability inherent in this signal is a challenging task,…

Signal Processing · Electrical Eng. & Systems 2024-01-17 Shivam Sharma , Suvadeep Maiti , S. Mythirayee , Srijithesh Rajendran , Raju Surampudi Bapi

Multimodal language modeling has enabled breakthroughs for representation learning, yet remains unexplored in the realm of functional brain data for clinical phenotyping. This paper pioneers EEG-language models (ELMs) trained on clinical…

Signal Processing · Electrical Eng. & Systems 2025-08-12 Sam Gijsen , Kerstin Ritter

Neurophysiological recordings such as electroencephalography (EEG) offer accessible and minimally invasive means of estimating physiological activity for applications in healthcare, diagnostic screening, and even immersive entertainment.…

Machine Learning · Computer Science 2025-10-13 Kleanthis Avramidis , Tiantian Feng , Woojae Jeong , Jihwan Lee , Wenhui Cui , Richard M Leahy , Shrikanth Narayanan

Recent advances in deep learning-based medical image registration have shown that training deep neural networks~(DNNs) does not necessarily require medical images. Previous work showed that DNNs trained on randomly generated images with…

Computer Vision and Pattern Recognition · Computer Science 2025-06-02 Junyu Chen , Shuwen Wei , Yihao Liu , Aaron Carass , Yong Du

Localizing neuronal activity in the brain, both in time and in space, is a central challenge to advance the understanding of brain function. Because of the inability of any single neuroimaging techniques to cover all aspects at once, there…

Neurons and Cognition · Quantitative Biology 2013-07-09 Yaroslav O. Halchenko , Michael Hanke , James V. Haxby , Stephen Jose Hanson , Christoph S. Herrmann

For protein sequence datasets, unlabeled data has greatly outpaced labeled data due to the high cost of wet-lab characterization. Recent deep-learning approaches to protein prediction have shown that pre-training on unlabeled data can yield…

Machine Learning · Computer Science 2020-12-02 Pascal Sturmfels , Jesse Vig , Ali Madani , Nazneen Fatema Rajani

Many sleep studies suffer from the problem of insufficient data to fully utilize deep neural networks as different labs use different recordings set ups, leading to the need of training automated algorithms on rather small databases,…

Machine Learning · Computer Science 2019-06-19 Huy Phan , Oliver Y. Chén , Philipp Koch , Alfred Mertins , Maarten De Vos

Transfer learning from supervised ImageNet models has been frequently used in medical image analysis. Yet, no large-scale evaluation has been conducted to benchmark the efficacy of newly-developed pre-training techniques for medical image…

Computer Vision and Pattern Recognition · Computer Science 2021-08-16 Mohammad Reza Hosseinzadeh Taher , Fatemeh Haghighi , Ruibin Feng , Michael B. Gotway , Jianming Liang

Electroencephalography (EEG) serves as an essential diagnostic tool in neurology; however, its accurate manual interpretation is a time-intensive process that demands highly specialized expertise, which remains relatively scarce and not…

Quantitative Methods · Quantitative Biology 2025-03-14 Ruggero G. Bettinardi , Mohamed Rahmouni , Ulysse Gimenez

The introduction of deep learning and transfer learning techniques in fields such as computer vision allowed a leap forward in the accuracy of image classification tasks. Currently there is only limited use of such techniques in…

Machine Learning · Computer Science 2019-07-03 Axel Uran , Coert van Gemeren , Rosanne van Diepen , Ricardo Chavarriaga , José del R. Millán

Loading models pre-trained on the large-scale corpus in the general domain and fine-tuning them on specific downstream tasks is gradually becoming a paradigm in Natural Language Processing. Previous investigations prove that introducing a…

Computation and Language · Computer Science 2021-09-15 Yao Qiu , Jinchao Zhang , Jie Zhou

Tracking biosignals is crucial for monitoring wellness and preempting the development of severe medical conditions. Today, wearable devices can conveniently record various biosignals, creating the opportunity to monitor health status…

Machine Learning · Computer Science 2024-03-07 Salar Abbaspourazad , Oussama Elachqar , Andrew C. Miller , Saba Emrani , Udhyakumar Nallasamy , Ian Shapiro

Neurological disorders pose major global health challenges, driving advances in brain signal analysis. Scalp electroencephalography (EEG) and intracranial EEG (iEEG) are widely used for diagnosis and monitoring. However, dataset…

Neurons and Cognition · Quantitative Biology 2025-10-24 Jiahe Li , Xin Chen , Fanqi Shen , Junru Chen , Yuxin Liu , Daoze Zhang , Zhizhang Yuan , Fang Zhao , Meng Li , Yang Yang

Automating sleep staging is vital to scale up sleep assessment and diagnosis to serve millions experiencing sleep deprivation and disorders and enable longitudinal sleep monitoring in home environments. Learning from raw polysomnography…

Signal Processing · Electrical Eng. & Systems 2021-04-06 Huy Phan , Oliver Y. Chén , Minh C. Tran , Philipp Koch , Alfred Mertins , Maarten De Vos

Data-efficient neural decoding is a central challenge for speech brain-computer interfaces. We present the first demonstration of transfer learning and cross-task decoding for MEG-based speech models spanning perception and production. We…

Machine Learning · Computer Science 2026-02-23 Xabier de Zuazo , Vincenzo Verbeni , Eva Navas , Ibon Saratxaga , Mathieu Bourguignon , Nicola Molinaro

Many paralinguistic tasks are closely related and thus representations learned in one domain can be leveraged for another. In this paper, we investigate how knowledge can be transferred between three paralinguistic tasks: speaker, emotion,…

Machine Learning · Computer Science 2017-06-13 John Gideon , Soheil Khorram , Zakaria Aldeneh , Dimitrios Dimitriadis , Emily Mower Provost

Sleep staging is a key method for assessing sleep quality and diagnosing sleep disorders. However, current deep learning methods face challenges: 1) postfusion techniques ignore the varying contributions of different modalities; 2)…

Machine Learning · Computer Science 2025-02-21 Chenjun Zhao , Xuesen Niu , Xinglin Yu , Long Chen , Na Lv , Huiyu Zhou , Aite Zhao
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