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Related papers: Pretraining on Sleep Data Improves non-Sleep Biosi…

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Foundation models for time series are emerging as powerful general-purpose backbones, yet their potential for domain-specific biomedical signals such as electroencephalography (EEG) remains rather unexplored. In this work, we investigate…

Machine Learning · Computer Science 2025-11-03 Théo Gnassounou , Yessin Moakher , Shifeng Xie , Vasilii Feofanov , Ievgen Redko

Many healthcare applications are inherently multimodal, involving several physiological signals. As sensors for these signals become more common, improving machine learning methods for multimodal healthcare data is crucial. Pretraining…

Machine Learning · Computer Science 2024-10-23 Ching Fang , Christopher Sandino , Behrooz Mahasseni , Juri Minxha , Hadi Pouransari , Erdrin Azemi , Ali Moin , Ellen Zippi

Accurate classification of sleep stages from less obtrusive sensor measurements such as the electrocardiogram (ECG) or photoplethysmogram (PPG) could enable important applications in sleep medicine. Existing approaches to this problem have…

Machine Learning · Computer Science 2024-11-08 Jonathan F. Carter , Lionel Tarassenko

Tasks ranging from sleep staging to clinical diagnosis traditionally rely on standard polysomnography (PSG) devices, bedside monitors and wearable devices, which capture diverse nocturnal biosignals (e.g., EEG, EOG, ECG, SpO$_2$). However,…

Machine Learning · Computer Science 2026-02-17 Weixuan Yuan , Zengrui Jin , Yichen Wang , Donglin Xie , Ziyi Ye , Chao Zhang , Xuesong Chen

Datasets in sleep science present challenges for machine learning algorithms due to differences in recording setups across clinics. We investigate two deep transfer learning strategies for overcoming the channel mismatch problem for cases…

Computer Vision and Pattern Recognition · Computer Science 2020-09-02 Alexander Neergaard Olesen , Poul Jennum , Emmanuel Mignot , Helge B. D. Sorensen

Analyzing electroencephalographic (EEG) time series can be challenging, especially with deep neural networks, due to the large variability among human subjects and often small datasets. To address these challenges, various strategies, such…

Machine Learning · Computer Science 2025-09-18 Niklas Grieger , Siamak Mehrkanoon , Stephan Bialonski

Specialized foundation models are beginning to emerge in various medical subdomains, but pretraining methodologies and parametric scaling with the size of the pretraining dataset are rarely assessed systematically and in a like-for-like…

Signal Processing · Electrical Eng. & Systems 2026-05-13 M A Al-Masud , Nils Strodthoff

Large-scale foundation models for EEG signals offer a promising path to generalizable brain-computer interface (BCI) applications, but they often suffer from misalignment between pretraining objectives and downstream tasks, as well as…

Machine Learning · Computer Science 2025-10-03 Suli Wang , Yangshen Deng , Zhenghua Bao , Xinyu Zhan , Yiqun Duan

Automated analysis of electroencephalography (EEG) has recently undergone a paradigm shift. The introduction of transformer architectures and self-supervised pretraining (SSL) has led to the development of EEG foundation models. These…

Neurons and Cognition · Quantitative Biology 2026-02-04 Hannah Portmann , Yosuke Morishima

Sleep is a complex physiological process evaluated through various modalities recording electrical brain, cardiac, and respiratory activities. We curate a large polysomnography dataset from over 14,000 participants comprising over 100,000…

Machine Learning · Computer Science 2024-05-29 Rahul Thapa , Bryan He , Magnus Ruud Kjaer , Hyatt Moore , Gauri Ganjoo , Emmanuel Mignot , James Zou

Self-supervised learning has produced impressive results in multimedia domains of audio, vision and speech. This paradigm is equally, if not more, relevant for the domain of biosignals, owing to the scarcity of labelled data in such…

Machine Learning · Computer Science 2024-03-07 Aditya Kommineni , Kleanthis Avramidis , Richard Leahy , Shrikanth Narayanan

In practical sleep stage classification, a key challenge is the variability of EEG data across different subjects and environments. Differences in physiology, age, health status, and recording conditions can lead to domain shifts between…

Signal Processing · Electrical Eng. & Systems 2025-01-08 Siyuan Zhao , Chenyu Liu , Yi Ding , Xinliang Zhou

Transfer learning for bio-signals has recently become an important technique to improve prediction performance on downstream tasks with small bio-signal datasets. Recent works have shown that pre-training a neural network model on a large…

Machine Learning · Computer Science 2024-12-19 Eloy Geenjaar , Lie Lu

Sleep stage classification constitutes an important preliminary exam in the diagnosis of sleep disorders. It is traditionally performed by a sleep expert who assigns to each 30s of signal a sleep stage, based on the visual inspection of…

Machine Learning · Statistics 2017-11-28 Stanislas Chambon , Mathieu Galtier , Pierrick Arnal , Gilles Wainrib , Alexandre Gramfort

Despite extensive research on the relationship between sleep and cognition, the connection between sleep microstructure and human performance across specific cognitive domains remains underexplored. This study investigates whether deep…

Artificial Intelligence · Computer Science 2025-06-03 Boshra Khajehpiri , Eric Granger , Massimiliano de Zambotti , Fiona C. Baker , Mohamad Forouzanfar

Sleep is essential for maintaining human health and quality of life. Analyzing physiological signals during sleep is critical in assessing sleep quality and diagnosing sleep disorders. However, manual diagnoses by clinicians are…

Signal Processing · Electrical Eng. & Systems 2025-10-02 Cheol-Hui Lee , Hakseung Kim , Byung C. Yoon , Dong-Joo Kim

Polysomnography (PSG), the gold standard test for sleep analysis, generates vast amounts of multimodal clinical data, presenting an opportunity to leverage self-supervised representation learning (SSRL) for pre-training foundation models to…

Biological signals, such as electroencephalograms (EEG), play a crucial role in numerous clinical applications, exhibiting diverse data formats and quality profiles. Current deep learning models for biosignals are typically specialized for…

Signal Processing · Electrical Eng. & Systems 2023-05-18 Chaoqi Yang , M. Brandon Westover , Jimeng Sun

Transfer learning, a technique commonly used in generative artificial intelligence, allows neural network models to bring prior knowledge to bear when learning a new task. This study demonstrates that transfer learning significantly…

Quantitative Methods · Quantitative Biology 2025-06-03 William G Coon , Diego Luna , Akshita Panagrahi , Matthew Reid , Mattson Ogg

In this study, we introduce an innovative EEG signal reconstruction sub-module designed to enhance the performance of deep learning models on EEG eye-tracking tasks. This sub-module can integrate with all Encoder-Classifier-based deep…

Human-Computer Interaction · Computer Science 2024-08-13 Weigeng Li , Neng Zhou , Xiaodong Qu
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