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Many proteins remain functionally unannotated. Sequence alignment (SA) uncovers missing annotations by transferring functional knowledge between species' sequence-conserved regions. Because SA is imperfect, network alignment (NA)…

Molecular Networks · Quantitative Biology 2020-06-16 Shawn Gu , Tijana Milenkovic

Real-world scientific applications frequently encounter incomplete observational data due to sensor limitations, geographic constraints, or measurement costs. Although neural operators significantly advanced PDE solving in terms of…

Machine Learning · Computer Science 2026-01-28 Jingren Hou , Hong Wang , Pengyu Xu , Chang Gao , Huafeng Liu , Liping Jing

The advent of Large Language Models (LLMs) has created new opportunities for the automation of scientific research spanning both experimental processes and computational simulations. This study explores the feasibility of constructing an…

Artificial Intelligence · Computer Science 2025-01-16 Zhihan Liu , Yubo Chai , Jianfeng Li

Routability optimization in modern EDA tools has benefited greatly from using machine learning (ML) models. Constructing and optimizing the performance of ML models continues to be a challenge. Neural Architecture Search (NAS) serves as a…

Machine Learning · Computer Science 2024-11-22 Arjun Sridhar , Chen-Chia Chang , Junyao Zhang , Yiran Chen

Authoring survey or review articles still requires significant tedious manual effort, despite many advancements in research knowledge management having the potential to improve efficiency, reproducibility, and reuse. However, these…

Digital Libraries · Computer Science 2024-10-23 Tim Wittenborg , Oliver Karras , Sören Auer

NORD (Neural Operations Research & Development) is an open source distributed deep learning architectural research framework, based on PyTorch, MPI and Horovod. It aims to make research of deep architectures easier for experts of different…

Neural and Evolutionary Computing · Computer Science 2018-10-23 George Kyriakides , Konstantinos Margaritis

Multimodal agents are making rapid progress on general computer-use tasks, yet existing benchmarks remain largely confined to browsers and basic desktop applications, falling short in professional software workflows that dominate real-world…

Software Engineering · Computer Science 2026-01-07 Jiaxin Ai , Yukang Feng , Fanrui Zhang , Jianwen Sun , Zizhen Li , Chuanhao Li , Yifan Chang , Wenxiao Wu , Ruoxi Wang , Mingliang Zhai , Kaipeng Zhang

Artificial intelligence operations (AIOps) play a pivotal role in identifying, mitigating, and analyzing anomalous system behaviors and alerts. However, the research landscape in this field remains limited, leaving significant gaps…

Machine Learning · Computer Science 2023-12-13 Daksh Dave , Gauransh Sawhney , Dhruv Khut , Sahil Nawale , Pushkar Aggrawal , Prasenjit Bhavathankar

Temporal processing is vital for extracting meaningful information from time-varying signals. Recent advancements in Spiking Neural Networks (SNNs) have shown immense promise in efficiently processing these signals. However, progress in…

Neural and Evolutionary Computing · Computer Science 2025-05-29 Xinyi Chen , Chenxiang Ma , Yujie Wu , Kay Chen Tan , Jibin Wu

The increasing adoption of UAVs with advanced sensors and GPU-accelerated edge computing has enabled real-time AI-driven applications in fields such as precision agriculture, wildfire monitoring, and environmental conservation. However,…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-30 Suman Raj , Rajdeep Singh , Kautuk Astu , Yogesh Simmhan

In this paper, we consider an aerial reconfigurable intelligent surface (ARIS)-assisted wireless network, where multiple unmanned aerial vehicles (UAVs) collect data from ground users (GUs) by using the non-orthogonal multiple access (NOMA)…

Networking and Internet Architecture · Computer Science 2024-12-31 Songhan Zhao , Shimin Gong , Bo Gu , Lanhua Li , Bin Lyu , Dinh Thai Hoang , Changyan Yi

Deep learning is increasingly impacting various aspects of contemporary society. Artificial neural networks have emerged as the dominant models for solving an expanding range of tasks. The introduction of Neural Architecture Search (NAS)…

Machine Learning · Computer Science 2023-07-04 Simone Sarti , Eugenio Lomurno , Matteo Matteucci

This paper explores the use of an extended neuroevolutionary approach, based on NeuroEvolution of Augmenting Topologies (NEAT), for autonomous robots in dynamic environments associated with hazardous tasks like firefighting, urban…

Neural and Evolutionary Computing · Computer Science 2025-04-28 Dhadkan Shrestha , Lincoln Bhattarai

Data science and engineering workflows often span multiple stages, from warehousing to orchestration, using tools like BigQuery, dbt, and Airbyte. As vision language models (VLMs) advance in multimodal understanding and code generation,…

Artificial intelligence systems are transforming scientific discovery by accelerating specific research tasks, from protein structure prediction to materials design, yet remain confined to narrow domains requiring substantial human…

Artificial Intelligence · Computer Science 2026-01-30 Gabrielle Wehr , Reuben Rideaux , Amaya J. Fox , David R. Lightfoot , Jason Tangen , Jason B. Mattingley , Shane E. Ehrhardt

Time series forecasting (TSF) is one of the most important tasks in data science given the fact that accurate time series (TS) predictive models play a major role across a wide variety of domains including finance, transportation, health…

Machine Learning · Computer Science 2023-02-22 Zimeng Lyu , Alexander Ororbia , Travis Desell

A novel framework is proposed for cellular offloading with the aid of multiple unmanned aerial vehicles (UAVs), while non-orthogonal multiple access (NOMA) technique is employed at each UAV to further improve the spectrum efficiency of the…

Networking and Internet Architecture · Computer Science 2020-12-01 Ruikang Zhong , Xiao Liu , Yuanwei Liu , Yue Chen

We present ScienceClaw + Infinite, a framework for autonomous scientific investigation in which independent agents conduct research without central coordination, and any contributor can deploy new agents into a shared ecosystem. The system…

Artificial Intelligence · Computer Science 2026-03-17 Fiona Y. Wang , Lee Marom , Subhadeep Pal , Rachel K. Luu , Wei Lu , Jaime A. Berkovich , Markus J. Buehler

In this work we propose a holistic framework for autonomous aerial inspection tasks, using semantically-aware, yet, computationally efficient planning and mapping algorithms. The system leverages state-of-the-art receding horizon…

Recent breakthroughs in artificial intelligence offer tremendous promise for the development of self-driving applications. Deep Neural Networks, in particular, are being utilized to support the operation of semi-autonomous cars through…

Computer Vision and Pattern Recognition · Computer Science 2024-01-23 Mahedi Kamal , Tasnim Fariha , Afrina Kabir Zinia , Md. Abu Syed , Fahim Hasan Khan , Md. Mahbubur Rahman
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