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Among aquaglyceroporins that transport both water and glycerol across the cell membrane, Escherichia coli glycerol uptake facilitator (GlpF) is the most thoroughly studied. However, one question remains: Does glycerol modulate water…

Biomolecules · Quantitative Biology 2013-03-19 Liao Y. Chen

In recent decades, the use of 4D Flow MRI images has enabled the quantification of velocity fields within a volume of interest and along the cardiac cycle. However, the lack of resolution and the presence of noise in these biomarkers are…

Image and Video Processing · Electrical Eng. & Systems 2025-06-26 Simon Perrin , Sébastien Levilly , Huajun Sun , Harold Mouchère , Jean-Michel Serfaty

We discuss the role of water bridging the DNA-enzyme interaction by resorting to recent results showing that London dispersion forces between delocalized electrons of base pairs of DNA are responsible for the formation of dipole modes that…

In this paper we analyse a previously proposed cell-based model of glioblastoma (brain tumour) growth, which is based on the assumption that the cancer cells switch phenotypes between a proliferative and motile state (Gerlee and Nelander,…

Tissues and Organs · Quantitative Biology 2017-02-20 Philip Gerlee , Sven Nelander

Glioblastoma is the most malignant type of central nervous system tumor with GBM subtypes cleaved based on molecular level gene alterations. These alterations are also happened to affect the histology. Thus, it can cause visible changes in…

Quantitative Methods · Quantitative Biology 2020-10-28 Navodini Wijethilake , Mobarakol Islam , Dulani Meedeniya , Charith Chitraranjan , Indika Perera , Hongliang Ren

Glioma is one of the most common and aggressive types of primary brain tumors. The accurate segmentation of subcortical brain structures is crucial to the study of gliomas in that it helps the monitoring of the progression of gliomas and…

Image and Video Processing · Electrical Eng. & Systems 2018-03-02 Lele Chen , Yue Wu , Adora M. DSouza , Anas Z. Abidin , Axel Wismuller , Chenliang Xu

The aim of the systematic review was to assess recently published studies on diagnostic test accuracy of glioblastoma treatment response monitoring biomarkers in adults, developed through machine learning (ML). Articles were searched for…

While aquaporin (AQP) gating dynamically regulates transmembrane water permeability for cellular homeostasis, its mechanisms remain poorly understood compared to ion channels. A central challenge is the lack of methods to measure water flow…

Biological Physics · Physics 2025-08-04 Hong Jiang , Jinnawat Jongkhumkrong , Y. J. Chao , Qian Wang , Guiren Wang

Promising results have been reported in quantifying microstructural parameters (free diffusivity, cell size, and membrane permeability) in head and neck cancers (HNCs) using time-dependent diffusion MRI fitted to Random Walk with Barrier…

Medical Physics · Physics 2025-06-17 Jiaren Zou , Yue Cao

Phantom systems consisting of liposome suspensions are widely employed to investigate quantitative MRI parameters mimicking cellular membranes. The proper physical understanding of the measurement results, however, requires proper models…

Medical Physics · Physics 2024-09-02 Heiko Neeb , Felix Schyboll , Rona Shaharabani , Aviv A. Mezer , Oshrat Shtangel

Acidosis in tumors arises from reprogrammed metabolism and compromised vasculature, creating a harsh, acidic microenvironment that drives the evolutionary selection of acid-resistant cell phenotypes. A mathematical model is proposed to…

Tissues and Organs · Quantitative Biology 2025-12-30 Prithvi Anickode , Fabio Milner

In the WHO glioma classification guidelines grade, IDH mutation and 1p19q co-deletion play a central role as they are important markers for prognosis and optimal therapy planning. Therefore, we propose a fully automatic, MRI based, 3D…

Image and Video Processing · Electrical Eng. & Systems 2020-05-26 Milan Decuyper , Stijn Bonte , Karel Deblaere , Roel Van Holen

Publicly available data is essential for the progress of medical image analysis, in particular for crafting machine learning models. Glioma is the most common group of primary brain tumors, and magnetic resonance imaging (MRI) is a widely…

Image and Video Processing · Electrical Eng. & Systems 2024-10-28 Meryem Abbad Andaloussi , Raphael Maser , Frank Hertel , François Lamoline , Andreas Dominik Husch

Histopathological examination of surgical biopsies, such as in glioma and glioblastoma resection, is hindered in current clinical practice by the long times required for the laboratory analysis and pathological screening, typically taking…

Here we present the University of California San Francisco Preoperative Diffuse Glioma MRI (UCSF-PDGM) dataset. The UCSF-PDGM dataset includes 500 subjects with histopathologically-proven diffuse gliomas who were imaged with a standardized…

Glioblastoma is a highly malignant brain tumor with a life expectancy of only 3 to 6 months without treatment. Detecting and predicting its survival and grade accurately are crucial. This study introduces a novel approach using transfer…

We report relaxation dynamics of glycerol-water mixtures as probed by megahertz-to-terahertz dielectric spectroscopy in a frequency range from 50 MHz to 0.5 THz at room temperature. The dielectric relaxation spectra reveal several…

Chemical Physics · Physics 2019-09-04 Ali Charkhesht , Djamila Lou , Ben Sindle , Chengyuan Wen , Shengfeng Cheng , Nguyen Q. Vinh

Dynamic Contrast-Enhanced Magnetic Resonance Imaging (DCE-MRI) is a valuable tool to localize, characterize, and evaluate anomalous prostate tissue. Ultrafast gradient-echo acquisitions of MRI volumes are generated at regular time intervals…

Medical Physics · Physics 2017-10-11 Wuilian Torres , Leonardo Cordero , Miguel Martín-Landrove , Antonio Rueda-Toicen

Tumour invasion is strongly influenced by microenvironment and, among other parameters, chemical stimuli play an important role. An innovative methodology for the quantitative investigation of chemotaxis in vitro by live imaging of…

Cell Behavior · Quantitative Biology 2022-03-29 Rosalia Ferraro , Flora Ascione , Prashant Dogra , Vittorio Cristini , Stefano Guido , Sergio Caserta

Pediatric high grade gliomas are lethal evolutionary disorders with stalled developmental trajectories and disrupted differentiation hierarchies. We integrate transcriptional and algorithmic network complexity based perturbation analysis to…

Quantitative Methods · Quantitative Biology 2025-09-24 Abicumaran Uthamacumaran , Hector Zenil