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The simplest, and most common, stochastic model for population processes, including those from biochemistry and cell biology, are continuous time Markov chains. Simulation of such models is often relatively straightforward as there are…

Probability · Mathematics 2012-03-01 David F. Anderson , Masanori Koyama

Stochastic Approximation (SA) is a classical algorithm that has had since the early days a huge impact on signal processing, and nowadays on machine learning, due to the necessity to deal with a large amount of data observed with…

Optimization and Control · Mathematics 2023-07-18 Aymeric Dieuleveut , Gersende Fort , Eric Moulines , Hoi-To Wai

Low precision arithmetic, in particular half precision floating point arithmetic, is now available in commercial hardware. Using lower precision can offer significant savings in computation and communication costs with proportional savings…

Numerical Analysis · Mathematics 2021-11-16 Eda Oktay , Erin Carson

Balanced Singular Perturbation Approximation (SPA) is a model order reduction method for linear time-invariant systems that guarantees asymptotic stability and for which there exists an a priori error bound. In that respect, it is similar…

Numerical Analysis · Mathematics 2023-03-10 Björn Liljegren-Sailer , Ion Victor Gosea

Stochastic rounding (SR) offers an alternative to the deterministic IEEE-754 floating-point rounding modes. In some applications such as PDEs, ODEs and neural networks, SR empirically improves the numerical behavior and convergence to…

Numerical Analysis · Mathematics 2023-06-06 El-Mehdi El Arar , Devan Sohier , Pablo de Oliveira Castro , Eric Petit

Discrete and mixed-variable optimization problems have appeared in several real-world applications. Most of the research on mixed-variable optimization considers a mixture of integer and continuous variables, and several integer handlings…

Optimization and Control · Mathematics 2024-08-26 Kento Uchida , Ryoki Hamano , Masahiro Nomura , Shota Saito , Shinichi Shirakawa

In the following paper we consider a simulation technique for stochastic trees. One of the most important areas in computational genetics is the calculation and subsequent maximization of the likelihood function associated to such models.…

Computation · Statistics 2015-05-20 Ajay Jasra , Maria De Iorio , Marc Chadeau-Hyam

Many machine learning algorithms minimize a regularized risk, and stochastic optimization is widely used for this task. When working with massive data, it is desirable to perform stochastic optimization in parallel. Unfortunately, many…

Machine Learning · Statistics 2023-11-27 Shin Matsushima , Hyokun Yun , Xinhua Zhang , S. V. N. Vishwanathan

Frugal computing is becoming an important topic for environmental reasons. In this context, several techniques have been proposed to reduce the storage of scientific data by dedicated compression methods specially tailored for arrays of…

Data Structures and Algorithms · Computer Science 2022-03-01 Matthieu Martel

This paper tackles the challenge of parameter calibration in stochastic models, particularly in scenarios where the likelihood function is unavailable in an analytical form. We introduce a gradient-based simulated parameter estimation…

Machine Learning · Statistics 2025-03-25 Zehao Li , Yijie Peng

This paper studies the problem of Simultaneous Sparse Approximation (SSA). This problem arises in many applications which work with multiple signals maintaining some degree of dependency such as radar and sensor networks. In this paper, we…

Information Theory · Computer Science 2023-04-04 Sahar Sadrizadeh , Shahrzad Kiani , Mahdi Boloursaz , Farokh Marvasti

We study the regret of simulated annealing (SA) based approaches to solving discrete stochastic optimization problems. The main theoretical conclusion is that the regret of the simulated annealing algorithm, with either noisy or noiseless…

Optimization and Control · Mathematics 2021-03-29 Suhail M. Shah

We explore the framework of a real-time coupled cluster method with a focus on improving its computational efficiency. Propagation of the wave function via the time-dependent Schr\"odinger equation places high demands on computing…

Computational Physics · Physics 2022-05-12 Zhe Wang , Benjamin G. Peyton , T. Daniel Crawford

Traditionally, stochastic approximation schemes for SVIs have relied on strong monotonicity and Lipschitzian properties of the underlying map. In contrast, we consider monotone stochastic variational inequality (SVI) problems where the…

Optimization and Control · Mathematics 2016-01-06 Farzad Yousefian , Angelia Nedić , Uday V. Shanbhag

Stochastic approximation (SA) is a key method used in statistical learning. Recently, its non-asymptotic convergence analysis has been considered in many papers. However, most of the prior analyses are made under restrictive assumptions…

Machine Learning · Statistics 2019-06-18 Belhal Karimi , Blazej Miasojedow , Eric Moulines , Hoi-To Wai

We present a highly efficient and accurate hybrid stochastic simulation algorithm (HSSA) for the purpose of simulating a subset of biochemical reactions of large gene regulatory networks (GRN). The algorithm relies on the separability of a…

Molecular Networks · Quantitative Biology 2020-09-29 Jaroslav Albert

Stochastic computing is a paradigm in which logical operations are performed on randomly generated bit streams. Complex arithmetic operations can be executed by simple logic circuits, resulting in a much smaller area footprint compared to…

Emerging Technologies · Computer Science 2023-07-10 Yadu Kiran , Marc Riedel

In this paper, we revisit \textsf{ROOT-SGD}, an innovative method for stochastic optimization to bridge the gap between stochastic optimization and statistical efficiency. The proposed method enhances the performance and reliability of…

Machine Learning · Statistics 2024-08-26 Chris Junchi Li

In biochemical systems some of the chemical species are present with only small numbers of molecules. In this situation discrete and stochastic simulation approaches are more relevant than continuous and deterministic ones. The fundamental…

Computational Engineering, Finance, and Science · Computer Science 2013-03-18 Tae-Hyuk Ahn , Adrian Sandu , Xiaoying Han

Recent advancements in quantization and mixed-precision approaches offers substantial opportunities to improve the speed and energy efficiency of Neural Networks (NN). Research has shown that individual parameters with varying low…

Hardware Architecture · Computer Science 2024-08-14 Giorgos Armeniakos , Alexis Maras , Sotirios Xydis , Dimitrios Soudris
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