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We present a succinct data structure for permutation graphs, and their superclass of circular permutation graphs, i.e., data structures using optimal space up to lower order terms. Unlike concurrent work on circle graphs (Acan et al. 2022),…

Data Structures and Algorithms · Computer Science 2022-09-27 Konstantinos Tsakalidis , Sebastian Wild , Viktor Zamaraev

We study graph realization problems from a distributed perspective and we study it in the node capacitated clique (NCC) model of distributed computing, recently introduced for representing peer-to-peer networks. We focus on two central…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-02-19 John Augustine , Keerti Choudhary , Avi Cohen , David Peleg , Sumathi Sivasubramaniam , Suman Sourav

Driven by many applications in graph analytics, the problem of computing $k$-edge connected components ($k$-ECCs) of a graph $G$ for a user-given $k$ has been extensively studied recently. In this paper, we investigate the problem of…

Data Structures and Algorithms · Computer Science 2017-11-29 Lijun Chang

Mining dense subgraphs on multi-layer graphs is an interesting problem, which has witnessed lots of applications in practice. To overcome the limitations of the quasi-clique-based approach, we propose d-coherent core (d-CC), a new notion of…

Databases · Computer Science 2017-10-03 Rong Zhu , Zhaonian Zou , Jianzhong Li

Connected Components (CC) is a core graph problem with numerous applications. This paper investigates accelerating distributed CC by optimizing memory and network bandwidth utilization. We present two novel distributed CC algorithms,…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-06 Mohsen Koohi Esfahani

Recent research on deep graph learning has shifted from static to dynamic graphs, motivated by the evolving behaviors observed in complex real-world systems. However, the temporal extension in dynamic graphs poses significant data…

Machine Learning · Computer Science 2025-06-17 Dong Chen , Shuai Zheng , Yeyu Yan , Muhao Xu , Zhenfeng Zhu , Yao Zhao , Kunlun He

The Dynamical Graph Grammar (DGG) formalism can describe complex system dynamics with graphs that are mapped into a master equation. An exact stochastic simulation algorithm may be used, but it is slow for large systems. To overcome this…

Quantitative Methods · Quantitative Biology 2024-07-16 Eric Medwedeff , Eric Mjolsness

Recently, deep learning based methods have demonstrated promising results on the graph matching problem, by relying on the descriptive capability of deep features extracted on graph nodes. However, one main limitation with existing deep…

Computer Vision and Pattern Recognition · Computer Science 2021-03-16 Quankai Gao , Fudong Wang , Nan Xue , Jin-Gang Yu , Gui-Song Xia

Erd\H{o}s and West (Discrete Mathematics'85) considered the class of $n$ vertex intersection graphs which have a {\em $d$-dimensional} {\em $t$-representation}, that is, each vertex of a graph in the class has an associated set consisting…

Data Structures and Algorithms · Computer Science 2024-02-07 Girish Balakrishnan , Sankardeep Chakraborty , Seungbum Jo , N S Narayanaswamy , Kunihiko Sadakane

Graph Transformers (GTs) have made remarkable achievements in graph-level tasks. However, most existing works regard graph structures as a form of guidance or bias for enhancing node representations, which focuses on node-central…

Machine Learning · Computer Science 2024-12-10 Xiaorui Qi , Qijie Bai , Yanlong Wen , Haiwei Zhang , Xiaojie Yuan

Dynamic Graph Neural Network (DGNN) has shown a strong capability of learning dynamic graphs by exploiting both spatial and temporal features. Although DGNN has recently received considerable attention by AI community and various DGNN…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-09-08 Fahao Chen , Peng Li , Celimuge Wu

Graph Convolutional Networks (GCNs) are extensively utilized for deep learning on graphs. The large data sizes of graphs and their vertex features make scalable training algorithms and distributed memory systems necessary. Since the…

Machine Learning · Computer Science 2022-12-14 Gunduz Vehbi Demirci , Aparajita Haldar , Hakan Ferhatosmanoglu

The edge clique cover (ECC) problem -- where the goal is to find a minimum cardinality set of cliques that cover all the edges of a graph -- is a classic NP-hard problem that has received much attention from both the theoretical and…

Data Structures and Algorithms · Computer Science 2023-07-06 Anthony Hevia , Benjamin Kallus , Summer McClintic , Samantha Reisner , Darren Strash , Johnathan Wilson

Self-supervised learning on graphs has recently drawn a lot of attention due to its independence from labels and its robustness in representation. Current studies on this topic mainly use static information such as graph structures but…

Machine Learning · Computer Science 2021-12-17 Linpu Jiang , Ke-Jia Chen , Jingqiang Chen

Graph convolutional networks (GCNs) have recently become one of the most powerful tools for graph analytics tasks in numerous applications, ranging from social networks and natural language processing to bioinformatics and chemoinformatics,…

Machine Learning · Computer Science 2019-04-05 Fengwen Chen , Shirui Pan , Jing Jiang , Huan Huo , Guodong Long

We define and study exact, efficient representations of realization spaces Euclidean Distance Constraint Systems (EDCS), which includes Linkages and Frameworks. Each representation corresponds to a choice of Cayley parameters and yields a…

Computational Geometry · Computer Science 2009-03-22 Meera Sitharam , Heping Gao

As a fundamental topic in graph mining, Densest Subgraph Discovery (DSD) has found a wide spectrum of real applications. Several DSD algorithms, including exact and approximation algorithms, have been proposed in the literature. However,…

Databases · Computer Science 2024-06-10 Yingli Zhou , Qingshuo Guo , Yi Yang , Yixiang Fang , Chenhao Ma , Laks Lakshmanan

The merging of succinct data structures is a well established technique for the space efficient construction of large succinct indexes. In the first part of the paper we propose a new algorithm for merging succinct representations of de…

Data Structures and Algorithms · Computer Science 2021-07-13 Lavinia Egidi , Felipe A. Louza , Giovanni Manzini

$k$-defective cliques relax cliques by allowing up-to $k$ missing edges from being a complete graph. This relaxation enables us to find larger near-cliques and has applications in link prediction, cluster detection, social network analysis…

Data Structures and Algorithms · Computer Science 2023-09-07 Lijun Chang

Given a hypergraph $H$, the dual hypergraph of $H$ is the hypergraph of all minimal transversals of $H$. A hypergraph is conformal if it is the family of maximal cliques of a graph. In a recent work, Boros, Gurvich, Milani\v{c}, and Uno…

Combinatorics · Mathematics 2025-06-24 Endre Boros , Vladimir Gurvich , Martin Milanič , Dmitry Tikhanovsky , Yushi Uno
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