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Related papers: Delayed control driven oscillations in plant roots

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We prove cyclic sieving phenomena satisfied by corner-rooted plane trees (alias ordered trees). The sets of rooted plane trees that we consider are: (1) all trees with $n$ nodes; (2) all trees with $n$ nodes and $k$ leaves; (3) all trees…

Combinatorics · Mathematics 2025-12-23 Mireille Bousquet-Mélou , Christian Krattenthaler

Cells in an epithelial monolayer coordinate motion with their neighbors giving rise to collectively moving packs of sizes spanning multiple cell diameters. The physical mechanism controlling the pack size, however, remains unclear. A…

Biological Physics · Physics 2021-07-21 Aashrith Saraswathibhatla , Silke Henkes , Emmett E. Galles , Rastko Sknepnek , Jacob Notbohm

Eukaryotic cells can move spontaneously without being guided by external cues. For such spontaneous movements, a variety of different modes have been observed, including the amoeboid-like locomotion with protrusion of multiple pseudopods,…

Cell Behavior · Quantitative Biology 2009-03-16 Shin I. Nishimura , Masahiro Ueda , Masaki Sasai

We consider the effect of asymmetric temporal delays in a system of two coupled Hopfield neurons. For couplings of opposite signs, a limit cycle emerges via a supercritical Hopf bifurcation when the sum of the delays reaches a critical…

Biological Physics · Physics 2011-11-10 Sebastian F. Brandt , Axel Pelster , Ralf Wessel

We study the dynamics and morphology of grain growth with anisotropic energy and mobility of grain boundaries using a generalized phase field model. In contrast to previous studies, both inclination and misorientation of the boundaries are…

Materials Science · Physics 2009-10-31 A. Kazaryan , Y. Wang , S. A. Dregia , Bruce R. Patton

Based on previously published experimental observations and mathematical models for Hes1, p53 and NF-kB gene expression, we improve these models through a distributed delay formulation of the time lag between transcription factor binding…

Molecular Networks · Quantitative Biology 2007-05-23 Katja Rateitschak , Olaf Wolkenhauer

In growing plant cells, parallel ordering of microtubules (MTs) along the inner surface of the cell membrane influences the direction of cell expansion and thereby plant morphology. For correct expansion of organs that primarily grow by…

Biological Physics · Physics 2019-09-05 Sven Bachmann , Richard Froese , Eric N Cytrynbaum

Linear model trees are regression trees that incorporate linear models in the leaf nodes. This preserves the intuitive interpretation of decision trees and at the same time enables them to better capture linear relationships, which is hard…

Machine Learning · Statistics 2024-07-10 Jakob Raymaekers , Peter J. Rousseeuw , Tim Verdonck , Ruicong Yao

The paper addresses the underlying source of two forms of induced anisotropy in granular materials: contact orientation anisotropy and contact force anisotropy. A rational, mathematical structure is reviewed for the manner in which fabric…

Soft Condensed Matter · Physics 2019-01-23 Matthew R. Kuhn

An adaptive observer is proposed to estimate the synaptic distribution between neurons asymptotically from the measurement of a part of the neuronal activity and a delayed neural field evolution model. The convergence of the observer is…

Optimization and Control · Mathematics 2024-03-14 Lucas Brivadis , Antoine Chaillet , Jean Auriol

Feedback alignment and related weight-transport-free algorithms are often proposed as biologically plausible alternatives to backpropagation, yet they are typically formulated in discrete phases with implicitly synchronized forward and…

Machine Learning · Computer Science 2026-03-03 Marc Gong Bacvanski , Liu Ziyin , Tomaso Poggio

We explore the joint effect of the intrinsic noise and time delay on the spatial pattern formation within a multi-scale mobile lattice model of the epithelium. The protein fluctuations are driven by transcription/translation processes in…

Adaptation and Self-Organizing Systems · Physics 2015-06-12 Dmitry Bratsun , Andrey Zakharov

Periodic orbits are fundamental to understand the dynamics of nonlinear systems. In this work, we focus on two aspects of interest regarding periodic orbits, in the context of a dissipative mapping, derived from a prototype model of a…

Chaotic Dynamics · Physics 2020-12-22 Danilo Rodrigues de Lima , Iberê Luiz Caldas

In this communication, the approach of phenomenological universalities of growth are considered to describe the behaviour of a system showing oscillatory growth. Two phenomenological classes are proposed to consider the behaviour of a…

Chaotic Dynamics · Physics 2015-07-20 Dibyendu Biswas , Swarup Poria , Sankar Nayaran Patra

In this paper, we formulate a geometric theory of the mechanics of arterial growth. An artery is modeled as a finite-length thick shell that is made of an incompressible nonlinear anisotropic solid. An initial radially-symmetric…

Soft Condensed Matter · Physics 2025-11-18 Aditya Kumar , Arash Yavari

The roots of some coastal and wetland trees grow peculiar vertical protrusions, the function of which remains unclear. Here, using computational simulations based on first-principles fluid and sedimentation dynamics, we argue that the…

Quantitative Methods · Quantitative Biology 2025-01-16 Martin Heidelman , Dervis Can Vural

Accurately forecasting flight departure delays is essential for improving operational efficiency and mitigating the cascading disruptions that propagate through tightly coupled aircraft rotations. Traditional machine learning approaches…

Systems and Control · Electrical Eng. & Systems 2025-12-10 Jianyang Zhou

We define a new balance index for rooted phylogenetic trees based on the symmetry of the evolutive history of every set of 4 leaves. This index makes sense for multifurcating trees and it can be computed in time linear in the number of…

Populations and Evolution · Quantitative Biology 2019-03-25 Tomás M. Coronado , Arnau Mir , Francesc Rosselló , Gabriel Valiente

For controlling periodic orbits with delayed feedback methods the periodicity has to be known a priori. We propose a simple scheme, how to detect the period of orbits from properties of the control signal, at least if a periodic but…

Experimental data suggest that the Earth short time dynamics is related to stochastic fluctuation of its shape. As a first approach to this problem, we derive a toy-model for the motion of a rotating ellipsoid in the framework of stochastic…

Mathematical Physics · Physics 2015-07-23 Etienne Behar , Jacky Cresson , Frédéric Pierret
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