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Given a Boolean network BN and a subset A of attractors of BN, we study the problem of identifying a minimal subset C of vertices of BN, such that the dynamics of BN can reach from a state s in any attractor As in A to any attractor At in A…

Systems and Control · Computer Science 2018-06-29 Soumya Paul , Jun Pang , Cui Su

Tools to analyze the latent space of deep neural networks provide a step towards better understanding them. In this work, we motivate sparse subspace clustering (SSC) with an aim to learn affinity graphs from the latent structure of a given…

Machine Learning · Computer Science 2021-07-06 Uday Singh Saini , Pravallika Devineni , Evangelos E. Papalexakis

Payment networks, also known as channels, are a most promising solution to the throughput problem of cryptocurrencies. In this paper we study the design of capital-efficient payment networks, offline as well as online variants. We want to…

Data Structures and Algorithms · Computer Science 2018-10-18 Georgia Avarikioti , Yuyi Wang , Roger Wattenhofer

A superimposed code is a collection of binary vectors (codewords) with the property that no vector is contained in the Boolean sum of any $k$ others, enabling unique identification of codewords within any group of $k$. Superimposed codes…

Data Structures and Algorithms · Computer Science 2025-08-05 Gianluca De Marco , Dariusz R. Kowalski

This paper presents a design space exploration for SABER, one of the finalists in NIST's quantum-resistant public-key cryptographic standardization effort. Our design space exploration targets a 65nm ASIC platform and has resulted in the…

Cryptography and Security · Computer Science 2021-09-17 Malik Imran , Felipe Almeida , Jaan Raik , Andrea Basso , Sujoy Sinha Roy , Samuel Pagliarini

A notorious open question in circuit complexity is whether Boolean operations of arbitrary arity can efficiently be expressed using modular counting gates only. H{\aa}stad's celebrated switching lemma yields exponential lower bounds for the…

Computational Complexity · Computer Science 2026-04-07 Benedikt Pago

Boolean networks are special types of finite state time-discrete dynamical systems. A Boolean network can be described by a function from an n-dimensional vector space over the field of two elements to itself. A fundamental problem in…

Quantitative Methods · Quantitative Biology 2013-07-03 Yi Ming Zou

Random Boolean networks (RBNs) are models of genetic regulatory networks. It is useful to describe RBNs as self-organizing systems to study how changes in the nodes and connections affect the global network dynamics. This article reviews…

Adaptation and Self-Organizing Systems · Physics 2010-09-24 Carlos Gershenson

Our brain consists of biological neurons encoding information through accurate spike timing, yet both the architecture and learning rules of our brain remain largely unknown. Comparing to the recent development of backpropagation-based…

Neural and Evolutionary Computing · Computer Science 2021-11-29 Yukun Yang , Peng Li

We present a fine-structure entanglement classification under stochastic local operation and classical communication (SLOCC) for multiqubit pure states. To this end, we employ specific algebraic-geometry tools that are SLOCC invariants,…

Quantum Physics · Physics 2022-10-31 Masoud Gharahi , Stefano Mancini , Giorgio Ottaviani

We introduce a mathematical framework for simulating Hybrid Boolean Network (HBN) Physically Unclonable Functions (PUFs, HBN-PUFs). We verify that the model is able to reproduce the experimentally observed PUF statistics for uniqueness…

Cryptography and Security · Computer Science 2024-10-28 Noeloikeau Charlot , Daniel J. Gauthier , Daniel Canaday , Andrew Pomerance

Stochastic block models (SBMs) are a very commonly studied network model for community detection algorithms. In the standard form of an SBM, the $n$ vertices (or nodes) of a graph are generally divided into multiple pre-determined…

Cryptography and Security · Computer Science 2024-06-06 Dung Nguyen , Anil Vullikanti

Pairing-based cryptography (PBC) is crucial in modern cryptographic applications. With the rapid advancement of adversarial research and the growing diversity of application requirements, PBC accelerators need regular updates in algorithms,…

Hardware Architecture · Computer Science 2025-09-15 Tianwei Pan , Tianao Dai , Jianlei Yang , Hongbin Jing , Yang Su , Zeyu Hao , Xiaotao Jia , Chunming Hu , Weisheng Zhao

A common method for delineating urban and suburban boundaries is to identify clusters of spatial units that are highly interconnected in a network of commuting flows, each cluster signaling a cohesive economic submarket. It is critical that…

Physics and Society · Physics 2024-05-09 Sebastian Morel-Balbi , Alec Kirkley

We present Spline-based Convolutional Neural Networks (SplineCNNs), a variant of deep neural networks for irregular structured and geometric input, e.g., graphs or meshes. Our main contribution is a novel convolution operator based on…

Computer Vision and Pattern Recognition · Computer Science 2018-05-24 Matthias Fey , Jan Eric Lenssen , Frank Weichert , Heinrich Müller

Currently, the field of structure-based drug design is dominated by three main types of algorithms: search-based algorithms, deep generative models, and reinforcement learning. While existing works have typically focused on comparing models…

Machine Learning · Computer Science 2026-01-22 Kangyu Zheng , Kai Zhang , Jiale Tan , Xuehan Chen , Yingzhou Lu , Zaixi Zhang , Lichao Sun , Marinka Zitnik , Tianfan Fu , Zhiding Liang

A fundamental algorithmic problem in computational biology is to find all subgraphs of a given type (superbubbles, snarls, and ultrabubbles) in a directed or bidirected input graph. These correspond to regions of genetic variation and are…

We develop a method for training neural networks on Boolean data in which the values at all nodes are strictly $\pm 1$, and the resulting models are typically equivalent to networks whose nonzero weights are also $\pm 1$. The method…

Machine Learning · Computer Science 2026-02-20 Veit Elser , Manish Krishan Lal

Gottesman-Knill theorem states that computations on stabilizer circuits can be simulated on a classical computer, conventional simulation algorithms extensively use linear algebra over bit strings. For instance, given a non-adaptive…

Quantum Physics · Physics 2025-11-10 Vsevolod I. Yashin

Disassembly of binary code is hard, but necessary for improving the security of binary software. Over the past few decades, research in binary disassembly has produced many tools and frameworks, which have been made available to researchers…

Cryptography and Security · Computer Science 2020-07-29 Chengbin Pang , Ruotong Yu , Yaohui Chen , Eric Koskinen , Georgios Portokalidis , Bing Mao , Jun Xu