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Related papers: OptimusKG: Unifying biomedical knowledge in a mode…

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The injection of domain-specific knowledge is crucial for adapting language models (LMs) to specialized fields such as biomedicine. While most current approaches rely on unstructured text corpora, this study explores two complementary…

Computation and Language · Computer Science 2026-04-21 Jaafer Klila , Sondes Bannour Souihi , Rahma Boujelben , Nasredine Semmar , Lamia Hadrich Belguith

Multi-omics data offer unprecedented insights into complex biological systems, yet their high dimensionality, sparsity, and intricate interactions pose significant analytical challenges. Network-based approaches have advanced multi-omics…

Much of human knowledge in cybersecurity is encapsulated within the ever-growing volume of scientific papers. As this textual data continues to expand, the importance of document organization methods becomes increasingly crucial for…

The increasing reliance on Large Language Models (LLMs) for health information seeking can pose severe risks due to the potential for misinformation and the complexity of these topics. This paper introduces KNOWNET a visualization system…

Human-Computer Interaction · Computer Science 2024-09-27 Youfu Yan , Yu Hou , Yongkang Xiao , Rui Zhang , Qianwen Wang

Knowledge graphs (KGs) provide structured, verifiable grounding for large language models (LLMs), but current LLM-based systems commonly use KGs as auxiliary structures for text retrieval, leaving their intrinsic quality underexplored. In…

Computation and Language · Computer Science 2026-01-30 Alla Chepurova , Aydar Bulatov , Mikhail Burtsev , Yuri Kuratov

The role of pharmacists is evolving from medicine dispensing to delivering comprehensive pharmaceutical services within multidisciplinary healthcare teams. Central to this shift is access to accurate, up-to-date medicinal product…

Artificial Intelligence · Computer Science 2025-06-24 Lizzy Farrugia , Lilian M. Azzopardi , Jeremy Debattista , Charlie Abela

Large language models (LLMs) often produce fluent reasoning steps while violating simple mathematical or logical constraints. We introduce MedRule-KG, a compact typed knowledge graph coupled with a symbolic verifier, designed to enforce…

Artificial Intelligence · Computer Science 2025-12-15 Crystal Su

Ontology-based knowledge graph (KG) construction is a core technology that enables multidimensional understanding and advanced reasoning over domain knowledge. Industrial standards, in particular, contain extensive technical information and…

Information Retrieval · Computer Science 2025-12-23 Jiin Park , Hyuna Jeon , Yoonseo Lee , Jisu Hong , Misuk Kim

Traditional methods of linking large language models (LLMs) to knowledge bases via the semantic similarity search often fall short of capturing complex relational dynamics. To address these limitations, we introduce AutoKG, a lightweight…

Computation and Language · Computer Science 2023-11-28 Bohan Chen , Andrea L. Bertozzi

Since Knowledge Graphs (KGs) contain rich semantic information, recently there has been an influx of KG-enhanced recommendation methods. Most of existing methods are entirely designed based on euclidean space without considering curvature.…

Information Retrieval · Computer Science 2023-08-30 Meng Yuan , Fuzhen Zhuang , Zhao Zhang , Deqing Wang , Jin Dong

The availability of vast amounts of visual data with heterogeneous features is a key factor for developing, testing, and benchmarking of new computer vision (CV) algorithms and architectures. Most visual datasets are created and curated for…

Computer Vision and Pattern Recognition · Computer Science 2024-03-29 Jicheng Yuan , Anh Le-Tuan , Manh Nguyen-Duc , Trung-Kien Tran , Manfred Hauswirth , Danh Le-Phuoc

Drug repurposing is often framed as a candidate identification task, but existing approaches provide limited guidance for distinguishing biologically plausible candidates from historically well-connected ones. Here we introduce DrugKLM, a…

The recent development of high-throughput sequencing creates a large collection of multi-omics data, which enables researchers to better investigate cancer molecular profiles and cancer taxonomy based on molecular subtypes. Integrating…

Genomics · Quantitative Biology 2024-01-25 Bingjun Li , Sheida Nabavi

Mapping clinical documents to standardised clinical vocabularies is an important task, as it provides structured data for information retrieval and analysis, which is essential to clinical research, hospital administration and improving…

Computation and Language · Computer Science 2025-09-15 Mingyang Li , Viktor Schlegel , Tingting Mu , Warren Del-Pinto , Goran Nenadic

Multimodal knowledge graphs (MMKGs) enrich traditional knowledge graphs (KGs) by incorporating diverse modalities such as images and text. multimodal knowledge graph completion (MMKGC) seeks to exploit these heterogeneous signals to infer…

Computation and Language · Computer Science 2025-08-12 Yongkang Xiao , Rui Zhang

Intensive Care Units (ICU) require comprehensive patient data integration for enhanced clinical outcome predictions, crucial for assessing patient conditions. Recent deep learning advances have utilized patient time series data, and fusion…

Machine Learning · Computer Science 2023-11-14 Samyak Jain , Manuel Burger , Gunnar Rätsch , Rita Kuznetsova

Domain experts often rely on most recent knowledge for apprehending and disseminating specific biological processes that help them design strategies for developing prevention and therapeutic decision-making in various disease scenarios. A…

Computation and Language · Computer Science 2023-11-21 Md. Rezaul Karim , Lina Molinas Comet , Md Shajalal , Oya Deniz Beyan , Dietrich Rebholz-Schuhmann , Stefan Decker

Structured and unstructured data and facts about drugs, genes, protein, viruses, and their mechanism are spread across a huge number of scientific articles. These articles are a large-scale knowledge source and can have a huge impact on…

Artificial Intelligence · Computer Science 2022-10-13 Md. Rezaul Karim , Hussain Ali , Prinon Das , Mohamed Abdelwaheb , Stefan Decker

The rapid advancement of medical technology has led to an exponential increase in multi-modal medical data, including imaging, genomics, and electronic health records (EHRs). Graph neural networks (GNNs) have been widely used to represent…

Quantitative Methods · Quantitative Biology 2024-10-03 Favour Nerrise , Alice Louise Heiman , Ehsan Adeli

Knowledge Graph has been proven effective in modeling structured information and conceptual knowledge, especially in the medical domain. However, the lack of high-quality annotated corpora remains a crucial problem for advancing the…

Computation and Language · Computer Science 2021-09-22 Dejie Chang , Mosha Chen , Chaozhen Liu , Liping Liu , Dongdong Li , Wei Li , Fei Kong , Bangchang Liu , Xiaobin Luo , Ji Qi , Qiao Jin , Bin Xu