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In computational biology, biological entities such as genes or proteins are usually annotated with terms extracted from Gene Ontology (GO). The functional similarity among terms of an ontology is evaluated by using Semantic Similarity…

Computational Engineering, Finance, and Science · Computer Science 2014-12-24 Mario Cannataro , Pietro Hiram Guzzi , Marianna Milano , Pierangelo Veltri

Personalized community detection aims to generate communities associated with user need on graphs, which benefits many downstream tasks such as node recommendation and link prediction for users, etc. It is of great importance but lack of…

Information Retrieval · Computer Science 2020-09-08 Zheng Gao , Chun Guo , Xiaozhong Liu

Denoising-based models, including diffusion and flow matching, have led to substantial advances in graph generation. Despite this progress, such models remain constrained by two fundamental limitations: a computational cost that scales…

Machine Learning · Computer Science 2026-04-02 Yoann Boget , Pablo Strasser , Alexandros Kalousis

In real world domains, most graphs naturally exhibit a hierarchical structure. However, data-driven graph generation is yet to effectively capture such structures. To address this, we propose a novel approach that recursively generates…

Machine Learning · Computer Science 2023-06-01 Mahdi Karami , Jun Luo

Networks serve as a tool used to examine the large-scale connectivity patterns in complex systems. Modelling their generative mechanism nonparametrically is often based on step-functions, such as the stochastic block models. These models…

Methodology · Statistics 2024-01-11 Arthur Verdeyme , Sofia C. Olhede

We consider the task of estimating a high-dimensional directed acyclic graph, given observations from a linear structural equation model with arbitrary noise distribution. By exploiting properties of common random graphs, we develop a new…

Machine Learning · Statistics 2019-12-30 Arjun Sondhi , Ali Shojaie

Spectral clustering methodologies, when extended to accommodate signed graphs, have encountered notable limitations in effectively encapsulating inherent grouping relationships. Recent findings underscore a substantial deterioration in the…

Social and Information Networks · Computer Science 2025-01-15 Muhieddine Shebaro , Lucas Rusnak , Martin Burtscher , Jelena Tešić

We have collected and cleaned two network data sets: Coauthorship and Citation networks for statisticians. The data sets are based on all research papers published in four of the top journals in statistics from $2003$ to the first half of…

Applications · Statistics 2021-06-01 Pengsheng Ji , Jiashun Jin

Data-driven analysis of large social networks has attracted a great deal of research interest. In this paper, we investigate 120 real social networks and their measurement-calibrated synthetic counterparts generated by four well-known…

Social and Information Networks · Computer Science 2019-08-23 Marcell Nagy , Roland Molontay

Designing algorithms that generate networks with a given degree sequence while varying both subgraph composition and distribution of subgraphs around nodes is an important but challenging research problem. Current algorithms lack control of…

Physics and Society · Physics 2015-12-07 Martin Ritchie , Luc Berthouze , Istvan Z Kiss

A fundamental problem in the analysis of network data is the detection of network communities, groups of densely interconnected nodes, which may be overlapping or disjoint. Here we describe a method for finding overlapping communities based…

Social and Information Networks · Computer Science 2015-03-19 Brian Ball , Brian Karrer , M. E. J. Newman

Hierarchies permeate the structure of real networks, whose nodes can be ranked according to different features. However, networks are far from tree-like structures and the detection of hierarchical ordering remains a challenge, hindered by…

Physics and Society · Physics 2020-10-07 Elisenda Ortiz , Guillermo García-Pérez , M. Ángeles Serrano

In many simulation studies involving networks there is the need to rely on a sample network to perform the simulation experiments. In many cases, real network data is not available due to privacy concerns. In that case we can recourse to…

Social and Information Networks · Computer Science 2014-11-25 Hebert Pérez-Rosés , Francesc Sebé

Online social networks (OSNs) have become increasingly relevant for studying social behavior and information diffusion. Nevertheless, they are limited by restricted access to real OSN data due to privacy, legal, and platform-related…

Social and Information Networks · Computer Science 2025-09-04 Alejandro Buitrago López , Javier Pastor-Galindo , José A. Ruipérez-Valiente

Community detection and edge prediction are both forms of link mining: they are concerned with discovering the relations between vertices in networks. Some of the vertex similarity measures used in edge prediction are closely related to the…

Physics and Society · Physics 2015-06-03 Bowen Yan , Steve Gregory

We investigate the widely encountered problem of detecting communities in multiplex networks, such as social networks, with an unknown arbitrary heterogeneous structure. To improve detectability, we propose a generative model that leverages…

Social and Information Networks · Computer Science 2019-11-27 Yuming Huang , Ashkan Panahi , Hamid Krim , Liyi Dai

Community detection, which focuses on clustering nodes or detecting communities in (mostly) a single network, is a problem of considerable practical interest and has received a great deal of attention in the research community. While being…

Machine Learning · Statistics 2017-11-07 Soumendu Sundar Mukherjee , Purnamrita Sarkar , Lizhen Lin

Graph clustering (or community detection) has long drawn enormous attention from the research on web mining and information networks. Recent literature on this topic has reached a consensus that node contents and link structures should be…

Social and Information Networks · Computer Science 2017-12-25 Carl Yang , Mengxiong Liu , Zongyi Wang , Liyuan Liu , Jiawei Han

Discovering communities in complex networks means grouping nodes similar to each other, to uncover latent information about them. There are hundreds of different algorithms to solve the community detection task, each with its own…

Social and Information Networks · Computer Science 2019-07-05 Michele Coscia

The stochastic block model is a powerful tool for inferring community structure from network topology. However, it predicts a Poisson degree distribution within each community, while most real-world networks have a heavy-tailed degree…

Social and Information Networks · Computer Science 2012-06-01 Yaojia Zhu , Xiaoran Yan , Cristopher Moore