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Graphs are fundamental objects that find widespread applications across computer science and beyond. Graph Theory has yielded deep insights about structural properties of various families of graphs, which are leveraged in the design and…

Data Structures and Algorithms · Computer Science 2023-08-30 Rachit Nimavat

Disentangled representation learning has recently attracted a significant amount of attention, particularly in the field of image representation learning. However, learning the disentangled representations behind a graph remains largely…

Machine Learning · Computer Science 2020-06-11 Xiaojie Guo , Liang Zhao , Zhao Qin , Lingfei Wu , Amarda Shehu , Yanfang Ye

Recent advances in knowledge graph embedding (KGE) rely on Euclidean/hyperbolic orthogonal relation transformations to model intrinsic logical patterns and topological structures. However, existing approaches are confined to rigid…

Machine Learning · Computer Science 2024-05-15 Rui Li , Chaozhuo Li , Yanming Shen , Zeyu Zhang , Xu Chen

Heterogeneous graphs generally refers to graphs with different types of nodes and edges. A common approach for extracting useful information from heterogeneous graphs is to use meta-graphs, which can be seen as a special kind of directed…

Machine Learning · Computer Science 2023-09-04 Hansi Yang , Peiyu Zhang , Quanming Yao

A class of neural networks that gained particular interest in the last years are neural ordinary differential equations (neural ODEs). We study input-output relations of neural ODEs using dynamical systems theory and prove several results…

Dynamical Systems · Mathematics 2023-09-29 Christian Kuehn , Sara-Viola Kuntz

Graph representation learning (GRL) has emerged as an effective technique for modeling graph-structured data. When modeling heterogeneity and dynamics in real-world complex networks, GRL methods designed for complex heterogeneous temporal…

Social and Information Networks · Computer Science 2026-05-19 Huan Liu , Pengfei Jiao , Mengzhou Gao , Chaochao Chen , Di Jin

Graph neural networks (GNNs) have proven effective in capturing relationships among nodes in a graph. This study introduces a novel perspective by considering a graph as a simplicial complex, encompassing nodes, edges, triangles, and…

Machine Learning · Computer Science 2024-04-23 Jinghan Huang , Qiufeng Chen , Yijun Bian , Pengli Zhu , Nanguang Chen , Moo K. Chung , Anqi Qiu

We propose a hierarchical normalizing flow model for generating molecular graphs. The model produces new molecular structures from a single-node graph by recursively splitting every node into two. All operations are invertible and can be…

Chemical Physics · Physics 2021-06-11 Maksim Kuznetsov , Daniil Polykovskiy

Generalized from image and language translation, graph translation aims to generate a graph in the target domain by conditioning an input graph in the source domain. This promising topic has attracted fast-increasing attention recently.…

Unsupervised attributed graph representation learning is challenging since both structural and feature information are required to be represented in the latent space. Existing methods concentrate on learning latent representation via…

Machine Learning · Computer Science 2021-04-28 Zelin Zang , Siyuan Li , Di Wu , Jianzhu Guo , Yongjie Xu , Stan Z. Li

Graph Convolution Networks (GCNs) are widely considered state-of-the-art for collaborative filtering. Although several GCN-based methods have been proposed and achieved state-of-the-art performance in various tasks, they can be…

Machine Learning · Computer Science 2023-11-22 Ke Xu , Yuanjie Zhu , Weizhi Zhang , Philip S. Yu

Neural ordinary differential equations (Neural ODEs) propose the idea that a sequence of layers in a neural network is just a discretisation of an ODE, and thus can instead be directly modelled by a parameterised ODE. This idea has had…

Machine Learning · Computer Science 2024-05-07 Christina Runkel , Ander Biguri , Carola-Bibiane Schönlieb

Real-world graph data environments intrinsically exist noise (e.g., link and structure errors) that inevitably disturb the effectiveness of graph representation and downstream learning tasks. For homogeneous graphs, the latest works use…

Machine Learning · Computer Science 2024-12-25 Xiong Zhang , Cheng Xie , Haoran Duan , Beibei Yu

The graph identification problem consists of discovering the interactions among nodes in a network given their state/feature trajectories. This problem is challenging because the behavior of a node is coupled to all the other nodes by the…

Systems and Control · Electrical Eng. & Systems 2023-10-24 Eduardo Sebastian , Thai Duong , Nikolay Atanasov , Eduardo Montijano , Carlos Sagues

We consider the problem of probabilistic forecasting over categories with graph structure, where the dynamics at a vertex depends on its local connectivity structure. We present GOPHER, a method that combines the inductive bias of graph…

Machine Learning · Computer Science 2021-12-21 Ke Alexander Wang , Danielle Maddix , Yuyang Wang

Topology identification and inference of processes evolving over graphs arise in timely applications involving brain, transportation, financial, power, as well as social and information networks. This chapter provides an overview of graph…

Signal Processing · Electrical Eng. & Systems 2025-12-12 Gonzalo Mateos , Yanning Shen , Georgios B. Giannakis , Ananthram Swami

Including intricate topological information (e.g., cycles) provably enhances the expressivity of message-passing graph neural networks (GNNs) beyond the Weisfeiler-Leman (WL) hierarchy. Consequently, Persistent Homology (PH) methods are…

Machine Learning · Computer Science 2026-02-05 Mattie Ji , Amauri H. Souza , Vikas Garg

Many graph representation learning (GRL) problems are dynamic, with millions of edges added or removed per second. A fundamental workload in this setting is dynamic link prediction: using a history of graph updates to predict whether a…

We provide a data structure for maintaining an embedding of a graph on a surface (represented combinatorially by a permutation of edges around each vertex) and computing generators of the fundamental group of the surface, in amortized time…

Data Structures and Algorithms · Computer Science 2007-05-23 David Eppstein

Graph embeddings play a critical role in graph representation learning, allowing machine learning models to explore and interpret graph-structured data. However, existing methods often rely on opaque, high-dimensional embeddings, limiting…

Machine Learning · Computer Science 2025-11-26 Astrit Tola , Funmilola Mary Taiwo , Cuneyt Gurcan Akcora , Baris Coskunuzer