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By leveraging recent progress of stochastic gradient descent methods, several works have shown that graphs could be efficiently laid out through the optimization of a tailored objective function. In the meantime, Deep Learning (DL)…

Machine Learning · Computer Science 2021-08-11 Loann Giovannangeli , Frederic Lalanne , David Auber , Romain Giot , Romain Bourqui

Generating diverse, all-atom conformational ensembles of dynamic proteins such as G-protein-coupled receptors (GPCRs) is critical for understanding their function, yet most generative models simplify atomic detail or ignore conformational…

Biomolecules · Quantitative Biology 2025-08-19 Aditya Sengar , Ali Hariri , Daniel Probst , Patrick Barth , Pierre Vandergheynst

Modeling dynamic graphs, such as those found in social networks, recommendation systems, and e-commerce platforms, is crucial for capturing evolving relationships and delivering relevant insights over time. Traditional approaches primarily…

Machine Learning · Computer Science 2025-04-29 Yuxia Wu , Lizi Liao , Yuan Fang

Graph deep learning has recently emerged as a powerful ML concept allowing to generalize successful deep neural architectures to non-Euclidean structured data. Such methods have shown promising results on a broad spectrum of applications…

Machine Learning · Computer Science 2022-05-16 Anees Kazi , Luca Cosmo , Seyed-Ahmad Ahmadi , Nassir Navab , Michael Bronstein

Directed acyclic graphs (DAGs) serve as crucial data representations in domains such as hardware synthesis and compiler/program optimization for computing systems. DAG generative models facilitate the creation of synthetic DAGs, which can…

Machine Learning · Computer Science 2025-03-04 Mufei Li , Viraj Shitole , Eli Chien , Changhai Man , Zhaodong Wang , Srinivas Sridharan , Ying Zhang , Tushar Krishna , Pan Li

The current paradigm of evaluating Large Language Models (LLMs) through static benchmarks comes with significant limitations, such as vulnerability to data contamination and a lack of adaptability to the evolving capabilities of LLMs.…

Computation and Language · Computer Science 2024-06-26 Zhehao Zhang , Jiaao Chen , Diyi Yang

Devising augmentations for graph contrastive learning is challenging due to their irregular structure, drastic distribution shifts, and nonequivalent feature spaces across datasets. We introduce LG2AR, Learning Graph Augmentations to Learn…

Machine Learning · Computer Science 2022-01-25 Kaveh Hassani , Amir Hosein Khasahmadi

Temporal link prediction in dynamic graphs is a fundamental problem in many real-world systems. Existing temporal graph neural networks mainly focus on learning representations of historical interactions. Despite their strong performance,…

Machine Learning · Computer Science 2026-02-02 Nguyen Minh Duc , Viet Cuong Ta

Graph generative models are essential across diverse scientific domains by capturing complex distributions over relational data. Among them, graph diffusion models achieve superior performance but face inefficient sampling and limited…

Machine Learning · Computer Science 2025-06-17 Yiming Qin , Manuel Madeira , Dorina Thanou , Pascal Frossard

Denoising language models (DLMs) have been proposed as a powerful alternative to traditional language models (LMs) for automatic speech recognition (ASR), motivated by their ability to use bidirectional context and adapt to a specific ASR…

Neural and Evolutionary Computing · Computer Science 2025-12-16 Dorian Koch , Albert Zeyer , Nick Rossenbach , Ralf Schlüter , Hermann Ney

Text-to-image diffusion models excel at translating language prompts into photorealistic images by implicitly grounding textual concepts through their cross-modal attention mechanisms. Recent multi-modal diffusion transformers extend this…

Computer Vision and Pattern Recognition · Computer Science 2025-09-23 Chaehyun Kim , Heeseong Shin , Eunbeen Hong , Heeji Yoon , Anurag Arnab , Paul Hongsuck Seo , Sunghwan Hong , Seungryong Kim

Scene graphs offer a structured, hierarchical representation of images, with nodes and edges symbolizing objects and the relationships among them. It can serve as a natural interface for image editing, dramatically improving precision and…

Computer Vision and Pattern Recognition · Computer Science 2024-10-16 Zhiyuan Zhang , DongDong Chen , Jing Liao

Graph diffusion models, dominant in graph generative modeling, remain underexplored for graph-to-graph translation tasks like chemical reaction prediction. We demonstrate that standard permutation equivariant denoisers face fundamental…

Machine Learning · Computer Science 2025-06-10 Najwa Laabid , Severi Rissanen , Markus Heinonen , Arno Solin , Vikas Garg

Despite the strong abilities, large language models (LLMs) still suffer from hallucinations and reliance on outdated knowledge, raising concerns in knowledge-intensive tasks. Graph-based retrieval-augmented generation (GRAG) enriches LLMs…

Computation and Language · Computer Science 2026-01-14 Derong Xu , Pengyue Jia , Xiaopeng Li , Yingyi Zhang , Maolin Wang , Qidong Liu , Xiangyu Zhao , Yichao Wang , Huifeng Guo , Ruiming Tang , Enhong Chen , Tong Xu

Recent advancements in diffusion models have notably improved the perceptual quality of generated images in text-to-image synthesis tasks. However, diffusion models often struggle to produce images that accurately reflect the intended…

Computer Vision and Pattern Recognition · Computer Science 2024-03-12 Yang Zhang , Teoh Tze Tzun , Lim Wei Hern , Tiviatis Sim , Kenji Kawaguchi

Diffusion models demonstrate remarkable capabilities in capturing complex data distributions and have achieved compelling results in many generative tasks. While they have recently been extended to dense prediction tasks such as depth…

Computer Vision and Pattern Recognition · Computer Science 2025-12-16 Haorui Ji , Taojun Lin , Hongdong Li

Automatic drum transcription (ADT) is traditionally formulated as a discriminative task to predict drum events from audio spectrograms. In this work, we redefine ADT as a conditional generative task and introduce Noise-to-Notes (N2N), a…

Sound · Computer Science 2026-03-06 Michael Yeung , Keisuke Toyama , Toya Teramoto , Shusuke Takahashi , Tamaki Kojima

Graph Neural Networks (GNNs) are powerful tools for processing relational data but often struggle to generalize to unseen graphs, giving rise to the development of Graph Foundational Models (GFMs). However, current GFMs are challenged by…

Machine Learning · Computer Science 2026-05-25 Weishuo Ma , Yanbo Wang , Xiyuan Wang , Lei Zou , Muhan Zhang

Large Language Models (LLMs) have shown exceptional performance across various Data-to-Text Generation (DTG) tasks. However, generating factually consistent text in DTG remains challenging for LLMs. Despite this, in-depth evaluations of LLM…

Computation and Language · Computer Science 2024-12-02 Joy Mahapatra , Utpal Garain

Graph Databases (Graph DB) find extensive application across diverse domains such as finance, social networks, and medicine. Yet, the translation of Natural Language (NL) into the Graph Query Language (GQL), referred to as NL2GQL, poses…

Computation and Language · Computer Science 2024-09-06 Yuanyuan Liang , Keren Tan , Tingyu Xie , Wenbiao Tao , Siyuan Wang , Yunshi Lan , Weining Qian