Related papers: RCSB PDB AI Help Desk: retrieval-augmented generat…

Retrieval-augmented generation (RAG) promises grounded question answering, yet domain settings with multiple heterogeneous knowledge bases (KBs) remain challenging. In Chinese Tibetan medicine, encyclopedia entries are often dense and easy…

Software engineers are increasingly adding semantic search capabilities to applications using a strategy known as Retrieval Augmented Generation (RAG). A RAG system involves finding documents that semantically match a query and then passing…

Decompilation converts machine code into human-readable form, enabling analysis and debugging without source code. However, fidelity issues often degrade the readability and semantic accuracy of decompiled output. Existing methods, such as…

Purpose: To develop and evaluate an automated system for extracting structured clinical information from unstructured radiology and pathology reports using open-weights large language models (LMs) and retrieval augmented generation (RAG),…

We explore the potential of Large Language Models (LLMs), Retrieval-Augmented Generation (RAG), and Graph-based RAG (GraphRAG) for generating Design Structure Matrices (DSMs). We test these methods on two distinct use cases -- a power…

The Poultry industry plays a vital role in global food security, yet small- and medium-scale farmers frequently lack timely access to expert-level support for disease diagnosis, nutrition planning, and management decisions. With rising…

Large Language Models (LLMs) exhibit remarkable capabilities but are prone to generating inaccurate or hallucinatory responses. This limitation stems from their reliance on vast pretraining datasets, making them susceptible to errors in…

While the flexible capabilities of large language models (LLMs) allow them to answer a range of queries based on existing learned knowledge, information retrieval to augment generation is an important tool to allow LLMs to answer questions…

Recent advances in Retrieval-Augmented Generation (RAG) have significantly improved response accuracy and relevance by incorporating external knowledge into Large Language Models (LLMs). However, existing RAG methods primarily focus on…

Asynchronous patient-clinician messaging via EHR portals is a growing source of clinician workload, prompting interest in large language models (LLMs) to assist with draft responses. However, LLM outputs may contain clinical inaccuracies,…

Given a semi-structured knowledge base (SKB), where text documents are interconnected by relations, how can we effectively retrieve relevant information to answer user questions? Retrieval-Augmented Generation (RAG) retrieves documents to…

Retrieval-Augmented Generation (RAG) systems are showing promising potential, and are becoming increasingly relevant in AI-powered legal applications. Existing benchmarks, such as LegalBench, assess the generative capabilities of Large…

Retrieval-Augmented Generation (RAG) is a technique that enhances the capabilities of large language models (LLMs) by incorporating external knowledge sources. This method addresses common LLM limitations, including outdated information and…

DNA-binding proteins (DBPs) are integral to gene regulation and cellular processes, making their accurate identification essential for understanding biological functions and disease mechanisms. Experimental methods for DBP identification…

Retrieval Augmented Generation (RAG) is a powerful approach for enhancing the factual grounding of language models by integrating external knowledge. While widely studied for large language models, the optimization of RAG for Small Language…

Large Language Models (LLMs) have demonstrated impressive capabilities across natural language processing tasks. However, their application to specialized domains such as medicine and biology requires further optimization to ensure factual…

Retrieval-Augmented Generation (RAG) is a framework in which a Generator, such as a Large Language Model (LLM), produces answers by retrieving documents from an external collection using a Retriever. In practice, Generators must integrate…

Generative modeling has become a central paradigm in protein research, extending machine learning beyond structure prediction toward sequence design, backbone generation, inverse folding, and biomolecular interaction modeling. However, the…

We propose a simple, unsupervised method that injects pragmatic principles in retrieval-augmented generation (RAG) frameworks such as Dense Passage Retrieval to enhance the utility of retrieved contexts. Our approach first identifies which…

We propose Retrieval Augmented Generation (RAG) as an approach for automated radiology report writing that leverages multimodally aligned embeddings from a contrastively pretrained vision language model for retrieval of relevant candidate…