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We study the problem of constructing phylogenetic trees for a given set of species. The problem is formulated as that of finding a minimum Steiner tree on $n$ points over the Boolean hypercube of dimension $d$. It is known that an optimal…

Data Structures and Algorithms · Computer Science 2012-06-18 Pranjal Awasthi , Avrim Blum , Jamie Morgenstern , Or Sheffet

The minimum degree spanning tree (MDST) problem requires the construction of a spanning tree $T$ for graph $G=(V,E)$ with $n$ vertices, such that the maximum degree $d$ of $T$ is the smallest among all spanning trees of $G$. In this paper,…

Data Structures and Algorithms · Computer Science 2018-06-12 Michael Dinitz , Magnús M. Halldórsson , Calvin Newport

Identifying optimal basic feasible solutions to linear programming problems is a critical task for mixed integer programming and other applications. The crossover method, which aims at deriving an optimal extreme point from a suboptimal…

Optimization and Control · Mathematics 2025-12-23 Dongdong Ge , Chengwenjian Wang , Zikai Xiong , Yinyu Ye

We consider the problem of minimizing a differentiable function with locally Lipschitz continuous gradient on a stratified set and present a first-order algorithm designed to find a stationary point of that problem. Our assumptions on the…

Optimization and Control · Mathematics 2023-03-29 Guillaume Olikier , Kyle A. Gallivan , P. -A. Absil

The optimization version of the cavity method for single instances, called Max-Sum, has been applied in the past to the Minimum Steiner Tree Problem on Graphs and variants. Max-Sum has been shown experimentally to give asymptotically…

Data Structures and Algorithms · Computer Science 2016-08-03 Alfredo Braunstein , Anna Muntoni

We have studied the Steiner tree problem using six-pin soap films in detail. We extend the existing method of experimental realisation of Steiner trees in $n$-terminal problem through soap films to observe new non-minimal Steiner trees. We…

Computational Geometry · Computer Science 2008-06-15 Prasun Dutta , S. Pratik Khastgir , Anushree Roy

In the Properly Colored Spanning Tree problem, we are given an edge-colored undirected graph and the goal is to find a properly colored spanning tree, i.e., a spanning tree in which any two adjacent edges have distinct colors. The problem…

Data Structures and Algorithms · Computer Science 2024-02-02 Yuhang Bai , Kristóf Bérczi , Gergely Csáji , Tamás Schwarcz

Recent years have witnessed rapid advances in the use of neural networks to solve combinatorial optimization problems. Nevertheless, designing the "right" neural model that can effectively handle a given optimization problem can be…

Artificial Intelligence · Computer Science 2023-12-21 Andrew B. Kahng , Robert R. Nerem , Yusu Wang , Chien-Yi Yang

It is challenging to design large and low-cost communication networks. In this paper, we formulate this challenge as the prize-collecting Steiner Tree Problem (PCSTP). The objective is to minimize the costs of transmission routes and the…

Networking and Internet Architecture · Computer Science 2019-02-07 Yahui Sun , Marcus Brazil , Doreen Thomas , Saman Halgamuge

Due to its broad applications in practice, the minimum spanning tree problem and its all kinds of variations have been studied extensively during the last decades, for which a host of efficient exact and heuristic algorithms have been…

Optimization and Control · Mathematics 2026-05-05 Yang Xu , Lianmin Zhang

Short spanning trees subject to additional constraints are important building blocks in various approximation algorithms. Especially in the context of the Traveling Salesman Problem (TSP), new techniques for finding spanning trees with…

Data Structures and Algorithms · Computer Science 2023-09-13 Martin Nägele , Rico Zenklusen

Given a directed graph $G$ and a list $(s_1,t_1),\dots,(s_d,t_d)$ of terminal pairs, the Directed Steiner Network problem asks for a minimum-cost subgraph of $G$ that contains a directed $s_i\to t_i$ path for every $1\le i \le k$. The…

Data Structures and Algorithms · Computer Science 2022-11-11 Andreas Emil Feldmann , Daniel Marx

The tree reconstruction problem is to find an embedded straight-line tree that approximates a given cloud of unorganized points in $\mathbb{R}^m$ up to a certain error. A practical solution to this problem will accelerate a discovery of new…

Computational Geometry · Computer Science 2020-07-20 Yury Elkin , Di Liu , Vitaliy Kurlin

The Steiner distance of vertices in a set $S$ is the minimum size of a connected subgraph that contain these vertices. The sum of the Steiner distances over all sets $S$ of cardinality $k$ is called the Steiner $k$-Wiener index and studied…

Combinatorics · Mathematics 2020-08-06 Jie Zhang , Hua Wang , Xiao-Dong Zhang

Tree projections provide a unifying framework to deal with most structural decomposition methods of constraint satisfaction problems (CSPs). Within this framework, a CSP instance is decomposed into a number of sub-problems, called views,…

Artificial Intelligence · Computer Science 2017-11-15 Georg Gottlob , Gianlugi Greco , Francesco Scarcello

The tree inclusion problem is, given two node-labeled trees $P$ and $T$ (the ``pattern tree'' and the ``target tree''), to locate every minimal subtree in $T$ (if any) that can be obtained by applying a sequence of node insertion operations…

Data Structures and Algorithms · Computer Science 2021-06-16 Tatsuya Akutsu , Jesper Jansson , Ruiming Li , Atsuhiro Takasu , Takeyuki Tamura

Given an undirected graph $G = (V, E)$ and a weight function $w:E \to \mathbb{R}$, the \textsc{Minimum Dominating Tree} problem asks to find a minimum weight sub-tree of $G$, $T = (U, F)$, such that every $v \in V \setminus U$ is adjacent…

Computational Complexity · Computer Science 2018-02-14 Gilad Kutiel

This paper summarizes the work on implementing few solutions for the Steiner Tree problem which we undertook in the PAAL project. The main focus of the project is the development of generic implementations of approximation algorithms…

Data Structures and Algorithms · Computer Science 2014-10-29 Krzysztof Ciebiera , Piotr Godlewski , Piotr Sankowski , Piotr Wygocki

We investigate the relation between energy minimizing maps valued into spheres having topological singularities at given points and optimal networks connecting them (e.g. Steiner trees, Gilbert-Steiner irrigation networks). We show the…

Optimization and Control · Mathematics 2023-02-28 Sisto Baldo , Van Phu Cuong Le , Annalisa Massaccesi , Giandomenico Orlandi

We say that a tree $T$ is an $S$-Steiner tree if $S \subseteq V(T)$ and a hypergraph is an $S$-Steiner hypertree if it can be trimmed to an $S$-Steiner tree. We prove that it is NP-complete to decide, given a hypergraph $\mathcal{H}$ and…

Combinatorics · Mathematics 2023-04-13 Florian Hörsch , Zoltán Szigeti
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