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While Large Language Models (LLMs) excel in question-answering (QA) tasks, their real reasoning abilities on multiple evidence retrieval and integration on Multi-hop QA tasks remain less explored. Firstly, LLMs sometimes generate answers…

Computation and Language · Computer Science 2024-10-16 Jian Wu , Linyi Yang , Zhen Wang , Manabu Okumura , Yue Zhang

Users frequently interact with software systems through data entry forms. However, form filling is time-consuming and error-prone. Although several techniques have been proposed to auto-complete or pre-fill fields in the forms, they provide…

Software Engineering · Computer Science 2024-08-20 Hichem Belgacem , Xiaochen Li , Domenico Bianculli , Lionel C. Briand

Qualitative Comparative Analysis (QCA) has been increasingly used in recent years due to its purported construction of a middle path between case-oriented and variable-oriented methods. Despite its popularity, a key element of the method…

Methodology · Statistics 2016-06-17 C. Ben Gibson , Burrel Vann

Static code analysis (SCA) tools are widely used as effective ways to detect bugs and vulnerabilities in software systems. However, the reports generated by these tools often contain a large number of non-actionable findings, which can…

Software Engineering · Computer Science 2026-04-21 Tamás Aladics , Norbert Vándor , Rudolf Ferenc , Péter Hegedűs

Transformers are state-of-the-art models for a variety of sequence modeling tasks. At their core is an attention function which models pairwise interactions between the inputs at every timestep. While attention is powerful, it does not…

Computation and Language · Computer Science 2021-03-23 Hao Peng , Nikolaos Pappas , Dani Yogatama , Roy Schwartz , Noah A. Smith , Lingpeng Kong

Software testing uses wide range of different tools to enhance the complicated process of defining quality of the system under test. Formal Concept Analysis (FCA) provides us with algorithms of deriving formal ontology from a set of objects…

Software Engineering · Computer Science 2015-05-07 Fedor Strok

Transformer has achieved remarkable success in language, image, and speech processing. Recently, various efficient attention architectures have been proposed to improve transformer's efficiency while largely preserving its efficacy,…

Machine Learning · Computer Science 2025-01-14 Jun Zhang , Shuyang Jiang , Jiangtao Feng , Lin Zheng , Lingpeng Kong

The Linguistic Annotation Framework (LAF) provides a general, extensible stand-off markup system for corpora. This paper discusses LAF-Fabric, a new tool to analyse LAF resources in general with an extension to process the Hebrew Bible in…

Computation and Language · Computer Science 2015-01-13 Dirk Roorda , Gino Kalkman , Martijn Naaijer , Andreas van Cranenburgh

Automata learning is a technique that has successfully been applied in verification, with the automaton type varying depending on the application domain. Adaptations of automata learning algorithms for increasingly complex types of automata…

Formal Languages and Automata Theory · Computer Science 2017-06-27 Gerco van Heerdt , Matteo Sammartino , Alexandra Silva

The power of foundation models (FMs) lies in their capacity to learn highly expressive representations that can be adapted to a broad spectrum of tasks. However, these pretrained models require additional training stages to become effective…

Machine Learning · Computer Science 2025-10-24 Jacob L. Block , Sundararajan Srinivasan , Liam Collins , Aryan Mokhtari , Sanjay Shakkottai

The field of protein folding research has been greatly advanced by deep learning methods, with AlphaFold2 (AF2) demonstrating exceptional performance and atomic-level precision. As co-evolution is integral to protein structure prediction,…

Quantitative Methods · Quantitative Biology 2023-06-06 Le Zhang , Jiayang Chen , Tao Shen , Yu Li , Siqi Sun

Fault Tree Analysis (FTA) is a well-established method in failure analysis and is widely used in safety and reliability assessments. While FTA tools enable users to manage complex analyses effectively, they can sometimes obscure the…

Systems and Control · Electrical Eng. & Systems 2025-07-09 Hamid Jahanian

We launch Parf - a toolkit for adaptively tuning abstraction strategies of static program analyzers in a fully automated manner. Parf models various types of external parameters (encoding abstraction strategies) as random variables subject…

Software Engineering · Computer Science 2025-10-17 Zhongyi Wang , Mingshuai Chen , Tengjie Lin , Linyu Yang , Junhao Zhuo , Qiuye Wang , Shengchao Qin , Xiao Yi , Jianwei Yin

Automated protein function prediction is a challenging problem with distinctive features, such as the hierarchical organization of protein functions and the scarcity of annotated proteins for most biological functions. We propose a…

Machine Learning · Statistics 2019-04-09 Marco Frasca , Nicolò Cesa Bianchi

The diverse nature of protein prediction tasks has traditionally necessitated specialized models, hindering the development of broadly applicable and computationally efficient Protein Language Models (PLMs). In this work, we introduce…

For classical fault analysis, a transient fault is required to be injected during runtime, e.g., only at a specific round. Instead, Persistent Fault Analysis (PFA) introduces a powerful class of fault attacks that allows for a fault to be…

Cryptography and Security · Computer Science 2021-05-31 Susanne Engels , Falk Schellenberg , Christof Paar

A fitness assignment process transforms the features (such as the objective value) of a candidate solution to a scalar fitness, which then is the basis for selection. Under Frequency Fitness Assignment (FFA), the fitness corresponding to an…

Neural and Evolutionary Computing · Computer Science 2022-05-26 Thomas Weise , Zhize Wu , Xinlu Li , Yan Chen , Jörg Lässig

Pretrained on large-scale and diverse datasets, VLA models demonstrate strong generalization and adaptability as general-purpose robotic policies. However, Supervised Fine-Tuning (SFT), which serves as the primary mechanism for adapting…

Robotics · Computer Science 2026-05-19 Yuan Liu , Haoran Li , Shuai Tian , Yuxing Qin , Yuhui Chen , Yupeng Zheng , Yongzhen Huang , Dongbin Zhao

In contrast to their remarkable performance on general knowledge QA, the true abilities of Large Language Models (LLMs) in tasks demanding deep, specialized reasoning, such as in protein biology, have yet to be thoroughly investigated.…

Quantitative Methods · Quantitative Biology 2025-12-30 Dingyi Rong , Zijian Chen , Qi Jia , Kaiwei Zhang , Haotian Lu , Guangtao Zhai , Ning Liu

Principal component analysis (PCA) is arguably the most widely used approach for large-dimensional factor analysis. While it is effective when the factors are sufficiently strong, it can be inconsistent when the factors are weak and/or the…

Methodology · Statistics 2025-08-22 Zhongyuan Lyu , Ming Yuan