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Large language models (LLMs) show promise for diagnostic reasoning but often lack reliable, knowledge grounded inference. Knowledge graphs (KGs), such as the Unified Medical Language System (UMLS), offer structured biomedical knowledge that…

Computation and Language · Computer Science 2025-09-24 Saksham Khatwani , He Cheng , Majid Afshar , Dmitriy Dligach , Yanjun Gao

Generating clinical reports from raw recordings such as X-rays and electroencephalogram (EEG) is an essential and routine task for doctors. However, it is often time-consuming to write accurate and detailed reports. Most existing methods…

Machine Learning · Computer Science 2020-03-05 Siddharth Biswal , Cao Xiao , Lucas M. Glass , M. Brandon Westover , Jimeng Sun

Reasoning in language models is difficult to evaluate: natural-language traces are unverifiable, symbolic datasets are too small, and most benchmarks conflate heuristics with inference. We present FOL-Traces, the first large-scale dataset…

Artificial Intelligence · Computer Science 2026-01-27 Isabelle Lee , Sarah Liaw , Dani Yogatama

Context engineering has emerged as a pivotal paradigm for unlocking the potential of Large Language Models (LLMs) in Software Engineering (SE) tasks, enabling performance gains at test time without model fine-tuning. Despite its success,…

Software Engineering · Computer Science 2026-04-07 Haichuan Hu , Quanjun Zhang , Ye Shang , Guoqing Xie , Chunrong Fang , Zhenyu Chen , Liang Xiao

Objective: This study introduces ChatSchema, an effective method for extracting and structuring information from unstructured data in medical paper reports using a combination of Large Multimodal Models (LMMs) and Optical Character…

Computation and Language · Computer Science 2024-07-29 Fei Wang , Yuewen Zheng , Qin Li , Jingyi Wu , Pengfei Li , Luxia Zhang

Modern large language models (LLMs) are powerful generators driven by statistical next-token prediction. While effective at producing fluent text, this design biases models toward high-probability continuations rather than exhaustive and…

Machine Learning · Computer Science 2026-02-09 Zhaoyang Chen , Cody Fleming

Developing accurate clinical prediction models is often bottlenecked by the difficulty of deriving meaningful structured features from unstructured EHR notes, a process that traditionally requires manual, unscalable clinical abstraction. In…

The user of Engineering Manuals (EM) finds it difficult to read EM s because they are long, have a dense format which includes written documents, step by step procedures, and standard parameter lists for engineering equipment. Off the shelf…

Computation and Language · Computer Science 2025-12-25 Divij Dudeja , Mayukha Pal

Large Language Models (LLMs) frequently hallucinate, limiting their reliability in critical applications. Conformal Prediction (CP) addresses this by calibrating error rates on held-out data to provide statistically valid confidence…

Machine Learning · Computer Science 2026-04-23 Nathan Hittesdorf , Marco Salzetta , Lu Cheng

Despite the wide adoption of Large Language Models (LLM)s, clinical decision support systems face a critical challenge: achieving high predictive accuracy while generating explanations aligned with the predictions. Current approaches suffer…

Artificial Intelligence · Computer Science 2026-05-07 H M Quamran Hasan , Housam Khalifa Bashier , Jiayi Dai , Mi-Young Kim , Randy Goebel

Despite rapid progress in logic locking (LL), reproducibility remains a challenge as codes are rarely made public. We present LockForge, a first-of-its-kind, multi-agent large language model (LLM) framework that turns LL descriptions in…

Cryptography and Security · Computer Science 2025-12-01 Akashdeep Saha , Zeng Wang , Prithwish Basu Roy , Johann Knechtel , Ozgur Sinanoglu , Ramesh Karri

We tackle the problem of weakly-supervised conversational Question Answering over large Knowledge Graphs using a neural semantic parsing approach. We introduce a new Logical Form (LF) grammar that can model a wide range of queries on the…

Computation and Language · Computer Science 2021-09-02 Pierre Marion , Paweł Krzysztof Nowak , Francesco Piccinno

Large language models (LLMs) remain brittle in multi-step structured workflows, where errors compound across sequential transformations, validation stages, and stateful operations such as SQL persistence. We present PlanCompiler, a…

Software Engineering · Computer Science 2026-04-16 Pranav Harikumar

Crucial information about the practice of healthcare is recorded only in free-form text, which creates an enormous opportunity for high-impact NLP. However, annotated healthcare datasets tend to be small and expensive to obtain, which…

Computation and Language · Computer Science 2019-04-09 Yifeng Tao , Bruno Godefroy , Guillaume Genthial , Christopher Potts

Reasoning abilities of LLMs have been a key focus in recent years. One challenging reasoning domain with interesting nuances is legal reasoning, which requires careful application of rules, and precedents while balancing deductive and…

Computation and Language · Computer Science 2025-02-11 Venkatesh Mishra , Bimsara Pathiraja , Mihir Parmar , Sat Chidananda , Jayanth Srinivasa , Gaowen Liu , Ali Payani , Chitta Baral

Large Language Models (LLMs) have been shown to encode clinical knowledge. Many evaluations, however, rely on structured question-answer benchmarks, overlooking critical challenges of interpreting and reasoning about unstructured clinical…

Computation and Language · Computer Science 2026-04-01 Meghal Dani , Muthu Jeyanthi Prakash , Filip Rosa , Zeynep Akata , Stefanie Liebe

Large language models (LLMs) show remarkable promise for democratizing automated reasoning by generating formal specifications. However, a fundamental tension exists: LLMs are probabilistic, while formal verification demands deterministic…

Current Large Language Models (LLMs) exhibit significant limitations, notably in structured, interpretable, and verifiable medical reasoning, alongside practical deployment challenges related to computational resources and data privacy.…

Computation and Language · Computer Science 2025-06-06 Boqin Zhuang , Chenxiao Song , Huitong Lu , Jiacheng Qiao , Mingqian Liu , Mingxing Yu , Ping Hong , Rui Li , Xiaoxia Song , Xiangjun Xu , Xu Chen , Yaoyao Ma , Yujie Gao

Large Language Models (LLMs) generate realistic synthetic data but offer no guarantee that their outputs respect the causal mechanisms governing the target domain. We introduce CausalSynth, a framework that decouples causal structure…

Machine Learning · Computer Science 2026-05-19 Zehua Cheng , Wei Dai , Jiahao Sun , Thomas Lukasiewicz

This work presents an ontology-integrated large language model (LLM) framework for chemical engineering that unites structured domain knowledge with generative reasoning. The proposed pipeline aligns model training and inference with the…

Machine Learning · Computer Science 2025-12-15 Crystal Su , Kuai Yu , Jingrui Zhang , Mingyuan Shao , Daniel Bauer
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