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Fast and accurate quantum error correction (QEC) decoding is crucial for scalable fault-tolerant quantum computation. Most-Likely-Error (MLE) decoding, while being near-optimal, is intractable on general quantum Low-Density Parity-Check…
We present an algorithm for computing a maximum agreement subtree of two unrooted evolutionary trees. It takes O(n^{1.5} log n) time for trees with unbounded degrees, matching the best known time complexity for the rooted case. Our…
In this paper, we apply the random walk model in designing a raindrop algorithm to find the global optimal solution of a non-linear programming problem. The raindrop algorithm does not require the information of the first or second order…
The cutting plane approach to optimal matchings has been discussed by several authors over the past decades (e.g., Padberg and Rao '82, Grotschel and Holland '85, Lovasz and Plummer '86, Trick '87, Fischetti and Lodi '07) and its…
Fitting distances to tree metrics and ultrametrics are two widely used methods in hierarchical clustering, primarily explored within the context of numerical taxonomy. Given a positive distance function…
This paper proposes a novel branch-and-bound(BMWVC) algorithm to exactly solve the minimum weight vertex cover problem (MWVC) in large graphs. The original contribution is several new graph reduction rules, allowing to reduce a graph G and…
We consider the following generalization of the binary search problem. A search strategy is required to locate an unknown target node $t$ in a given tree $T$. Upon querying a node $v$ of the tree, the strategy receives as a reply an…
An algorithm on weighted graphs is called universally optimal if it is optimal for every input graph, in the worst case taken over all weight assignments. Informally, this means the algorithm is competitive even with algorithms that are…
We address here spanning tree problems on a graph with binary edge weights. For a general weighted graph the minimum spanning tree is solved in super-linear running time, even when the edges of the graph are pre-sorted. A related problem,…
In the Inverse Matroid problem, we are given a matroid, a fixed basis $B$, and an initial weight function, and the goal is to minimally modify the weights -- measured by some function -- so that $B$ becomes a maximum-weight basis. The…
Past studies on the local limit of maximal weight matchings in edge-weighted large random graphs rely fundamentally on the assumption that the weights are atomless, which ensures that the maximal weight matching is unique. This excludes de…
We present the first data structures that maintain near optimal maximum cardinality and maximum weighted matchings on sparse graphs in sublinear time per update. Our main result is a data structure that maintains a $(1+\epsilon)$…
Research in explorable uncertainty addresses combinatorial optimization problems where there is partial information about the values of numeric input parameters, and exact values of these parameters can be determined by performing costly…
Randomised algorithms often employ methods that can fail and that are retried with independent randomness until they succeed. Randomised data structures therefore often store indices of successful attempts, called seeds. If $n$ such seeds…
Given a pattern x of length m and a text y of length n, both over an ordered alphabet, the order-preserving pattern matching problem consists in finding all substrings of the text with the same relative order as the pattern. It is an…
The maximum matching problem in dynamic graphs subject to edge updates (insertions and deletions) has received much attention over the last few years; a multitude of approximation/time tradeoffs were obtained, improving upon the folklore…
We significantly improve known time bounds for solving the minimum cut problem on undirected graphs. We use a ``semi-duality'' between minimum cuts and maximum spanning tree packings combined with our previously developed random sampling…
Cardinality-constrained diameter partitioning asks for a partition of $n$ items into two classes of prescribed sizes that minimizes the larger of the two class diameters. We give an $O(n^2)$ algorithm and a matching $\Omega(n^2)$ lower…
We give an efficient perfect sampling algorithm for weighted, connected induced subgraphs (or graphlets) of rooted, bounded degree graphs. Our algorithm utilizes a vertex-percolation process with a carefully chosen rejection filter and…
Finding the clique of maximum cardinality in an arbitrary graph is an NP-Hard problem that has many applications, which has motivated studies to solve it exactly despite its difficulty. The great majority of algorithms proposed in the…