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Related papers: Mol-Debate: Multi-Agent Debate Improves Structural…

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Large Language Models are transforming software development by automatically generating code. Current prompting techniques such as Chain-of-Thought (CoT) suggest tasks step by step and the reasoning process follows a linear structure, which…

Software Engineering · Computer Science 2025-03-18 Ruwei Pan , Hongyu Zhang

Recent advancements in large language models (LLMs) have given rise to the LLM-as-a-judge paradigm, showcasing their potential to deliver human-like judgments. However, in the field of machine translation (MT) evaluation, current…

Computation and Language · Computer Science 2025-02-21 Zhaopeng Feng , Jiayuan Su , Jiamei Zheng , Jiahan Ren , Yan Zhang , Jian Wu , Hongwei Wang , Zuozhu Liu

In the field of chemical engineering, traditional data-processing and prediction methods face significant challenges. Machine-learning and large-language models (LLMs) also have their respective limitations. This paper explores the…

Machine Learning · Computer Science 2025-02-19 Tianhang Zhou , Yingchun Niu , Xingying Lan , Chunming Xu

The success of language models, especially transformer-based architectures, has trickled into other domains giving rise to "scientific language models" that operate on small molecules, proteins or polymers. In chemistry, language models…

Chemical Physics · Physics 2024-10-22 Nikita Janakarajan , Tim Erdmann , Sarath Swaminathan , Teodoro Laino , Jannis Born

While generative models have recently become ubiquitous in many scientific areas, less attention has been paid to their evaluation. For molecular generative models, the state-of-the-art examines their output in isolation or in relation to…

The fundamental goal of generative drug design is to propose optimized molecules that meet predefined activity, selectivity, and pharmacokinetic criteria. Despite recent progress, we argue that existing generative methods are limited in…

Chemical Physics · Physics 2020-12-17 Julien Horwood , Emmanuel Noutahi

We introduce RedDebate, a novel multi-agent debate framework that provides the foundation for Large Language Models (LLMs) to identify and mitigate their unsafe behaviours. Existing AI safety approaches often rely on costly human evaluation…

Computation and Language · Computer Science 2025-10-13 Ali Asad , Stephen Obadinma , Radin Shayanfar , Xiaodan Zhu

Advances in large language models (LLMs) have recently opened new and promising avenues for small-molecule drug discovery. Yet existing LLM-based approaches for molecular generation often suffer from high rates of invalid and low-quality…

Machine Learning · Computer Science 2026-05-15 Andrew Y. Zhou , Sharvaree Vadgama , Sumanth Varambally , Peter Eckmann , Michael K. Gilson , Rose Yu

Clinical dialogue represents a complex duality requiring both the empathetic fluency of natural conversation and the rigorous precision of evidence-based medicine. While Large Language Models possess unprecedented linguistic capabilities,…

Other Quantitative Biology · Quantitative Biology 2025-12-02 Xiaoquan Zhi , Hongke Zhao , Likang Wu , Chuang Zhao , Hengshu Zhu

This paper focuses on the dynamic optimization of the Retrieval-Augmented Generation (RAG) architecture. It proposes a state-aware dynamic knowledge retrieval mechanism to enhance semantic understanding and knowledge scheduling efficiency…

Computation and Language · Computer Science 2025-04-29 Jacky He , Guiran Liu , Binrong Zhu , Hanlu Zhang , Hongye Zheng , Xiaokai Wang

Multi-agent debate system (MAD) imitating the process of human discussion in pursuit of truth, aims to align the correct cognition of different agents for the optimal solution. It is challenging to make various agents perform right and…

Computation and Language · Computer Science 2024-07-12 Haotian Wang , Xiyuan Du , Weijiang Yu , Qianglong Chen , Kun Zhu , Zheng Chu , Lian Yan , Yi Guan

Large language models (LLMs) face significant challenges when processing complex rule systems, as they typically treat interdependent rules as unstructured textual data rather than as logically organized frameworks. This limitation results…

Motivation: Developing high-performing bioinformatics models typically requires repeated cycles of hypothesis formulation, architectural redesign, and empirical validation, making progress slow, labor-intensive, and difficult to reproduce.…

Multiagent Systems · Computer Science 2026-01-22 Sunghyun Kim , Seokwoo Yun , Youngseo Yun , Youngrak Lee , Sangsoo Lim

Large Language Models (LLMs) have advanced autonomous agents' planning and decision-making, yet they struggle with complex tasks requiring diverse expertise and multi-step reasoning. Multi-Agent Debate (MAD) systems, introduced in NLP…

Software Engineering · Computer Science 2025-03-18 Jina Chun , Qihong Chen , Jiawei Li , Iftekhar Ahmed

We present R-Debater, an agentic framework for generating multi-turn debates built on argumentative memory. Grounded in rhetoric and memory studies, the system views debate as a process of recalling and adapting prior arguments to maintain…

Computation and Language · Computer Science 2026-01-01 Maoyuan Li , Zhongsheng Wang , Haoyuan Li , Jiamou Liu

The rapid evolution of artificial intelligence in drug discovery encounters challenges with generalization and extensive training, yet Large Language Models (LLMs) offer promise in reshaping interactions with complex molecular data. Our…

Biomolecules · Quantitative Biology 2024-12-20 He Cao , Zijing Liu , Xingyu Lu , Yuan Yao , Yu Li

Drug toxicity remains a major challenge in pharmaceutical development. Recent machine learning models have improved in silico toxicity prediction, but their reliance on annotated data and lack of interpretability limit their applicability.…

Machine Learning · Computer Science 2025-11-06 Jueon Park , Yein Park , Minju Song , Soyon Park , Donghyeon Lee , Seungheun Baek , Jaewoo Kang

Despite the great popularity of virtual screening of existing compound libraries, the search for new potential drug candidates also takes advantage of generative protocols, where new compound suggestions are enumerated using various…

Biomolecules · Quantitative Biology 2023-12-22 Tomasz Danel , Jan Łęski , Sabina Podlewska , Igor T. Podolak

By extending the advantage of chain-of-thought (CoT) reasoning in human-like step-by-step processes to multimodal contexts, multimodal CoT (MCoT) reasoning has recently garnered significant research attention, especially in the integration…

Computer Vision and Pattern Recognition · Computer Science 2025-03-25 Yaoting Wang , Shengqiong Wu , Yuecheng Zhang , Shuicheng Yan , Ziwei Liu , Jiebo Luo , Hao Fei

Large language models (LLMs) have demonstrated remarkable capabilities in language generation, understanding, and few-shot learning in recent years. An extensive body of work has explored how their performance may be further improved…

Computation and Language · Computer Science 2023-05-24 Yilun Du , Shuang Li , Antonio Torralba , Joshua B. Tenenbaum , Igor Mordatch