Related papers: Faster Linear-Space Data Structures for Path Frequ…
The retrieval problem is the problem of associating data with keys in a set. Formally, the data structure must store a function f: U ->{0,1}^r that has specified values on the elements of a given set S, a subset of U, |S|=n, but may have…
We present a general framework for designing efficient data structures for high-dimensional pattern-matching problems ($\exists \;? i\in[n], f(x_i,y)=1$) through communication models in which $f(x,y)$ admits sublinear communication…
In this paper we propose a dynamic data structure that supports efficient algorithms for updating and querying singly connected Bayesian networks (causal trees and polytrees). In the conventional algorithms, new evidence in absorbed in time…
Internal pattern matching requires one to answer queries about factors of a given string. Many results are known on answering internal period queries, asking for the periods of a given factor. In this paper we investigate (for the first…
We present the first fully dynamic worst case I/O-efficient data structures that support planar orthogonal \textit{3-sided range skyline reporting queries} in $\bigO (\log_{2B^\epsilon} n + \frac{t}{B^{1-\epsilon}})$ I/Os and updates in…
In this paper we describe compressed indexes that support pattern matching queries for strings with wildcards. For a constant size alphabet our data structure uses $O(n\log^{\varepsilon}n)$ bits for any $\varepsilon>0$ and reports all…
We give a simplified and improved lower bound for the simplex range reporting problem. We show that given a set $P$ of $n$ points in $\mathbb{R}^d$, any data structure that uses $S(n)$ space to answer such queries must have…
Given a set $S$ of $n$ (distinct) keys from key space $[U]$, each associated with a value from $\Sigma$, the \emph{static dictionary} problem asks to preprocess these (key, value) pairs into a data structure, supporting value-retrieval…
A dictionary data structure maintains a set of at most $n$ keys from the universe $[U]$ under key insertions and deletions, such that given a query $x \in [U]$, it returns if $x$ is in the set. Some variants also store values associated to…
This paper presents a general technique for optimally transforming any dynamic data structure that operates on atomic and indivisible keys by constant-time comparisons, into a data structure that handles unbounded-length keys whose…
Prefix-free parsing (PFP) was introduced by Boucher et al. (2019) as a preprocessing step to ease the computation of Burrows-Wheeler Transforms (BWTs) of genomic databases. Given a string $S$, it produces a dictionary $D$ and a parse $P$ of…
In this paper we describe a dynamic data structure that answers one-dimensional stabbing-max queries in optimal $O(\log n/\log\log n)$ time. Our data structure uses linear space and supports insertions and deletions in $O(\log n)$ and…
We give an algorithm that computes a $(1+\epsilon)$-approximate Steiner forest in near-linear time $n \cdot 2^{(1/\epsilon)^{O(ddim^2)} (\log \log n)^2}$. This is a dramatic improvement upon the best previous result due to Chan et al., who…
We revisit two well-known algorithmic problems on strings: computing a shortest unique substring (SUS) and a shortest absent substring (SAS) of a string $S$ of length $n$. Both problems admit folklore $\mathcal{O}(n)$-time solutions using…
$ $In its usual form, Grover's quantum search algorithm uses $O(\sqrt{N})$ queries and $O(\sqrt{N} \log N)$ other elementary gates to find a solution in an $N$-bit database. Grover in 2002 showed how to reduce the number of other gates to…
Given a set of pairwise disjoint polygonal obstacles in the plane, finding an obstacle-avoiding Euclidean shortest path between two points is a classical problem in computational geometry and has been studied extensively. Previously,…
We propose algorithms that, given the input string of length $n$ over integer alphabet of size $\sigma$, construct the Burrows-Wheeler transform (BWT), the permuted longest-common-prefix (PLCP) array, and the LZ77 parsing in…
The shortest paths problem is a fundamental challenge in graph theory, with a broad range of potential applications. The algorithms based on matrix multiplication exhibits excellent parallelism and scalability, but is constrained by high…
Given an undirected unweighted graph $G$ and a source set $S$ of $|S| = \sigma $ sources, we want to build a data structure which can process the following query {\sc Q}$(s,t,e):$ find the shortest distance from $s$ to $t$ avoiding an edge…
Approximate Pattern Matching is among the most fundamental string-processing tasks. Given a text $T$ of length $n$, a pattern $P$ of length $m$, and a threshold $k$, the task is to identify the fragments of $T$ that are at distance at most…