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Biomedical named entity recognition (NER) presents unique challenges due to specialized vocabularies, the sheer volume of entities, and the continuous emergence of novel entities. Traditional NER models, constrained by fixed taxonomies and…

Computation and Language · Computer Science 2025-05-22 Anthony Yazdani , Ihor Stepanov , Douglas Teodoro

Inspired by the remarkable success of foundation models in language and vision, Graph Foundation Models (GFMs) hold significant promise for broad applicability across diverse graph tasks and domains. However, existing GFMs struggle with…

Machine Learning · Computer Science 2025-11-11 Haonan Yuan , Qingyun Sun , Junhua Shi , Xingcheng Fu , Bryan Hooi , Jianxin Li , Philip S. Yu

Geometric deep learning has recently gained significant attention in the computer vision community for its ability to capture meaningful representations of data lying in a non-Euclidean space. To this end, we propose E2E-GNet, an end-to-end…

Computer Vision and Pattern Recognition · Computer Science 2026-03-04 Mubarak Olaoluwa , Hassen Drira

Named Entity Recognition (NER) is essential in various Natural Language Processing (NLP) applications. Traditional NER models are effective but limited to a set of predefined entity types. In contrast, Large Language Models (LLMs) can…

Computation and Language · Computer Science 2023-11-16 Urchade Zaratiana , Nadi Tomeh , Pierre Holat , Thierry Charnois

In biomedical fields, one named entity may consist of a series of non-adjacent tokens and overlap with other entities. Previous methods recognize discontinuous entities by connecting entity fragments or internal tokens, which face…

Computation and Language · Computer Science 2025-10-14 Yawen Yang , Fukun Ma , Shiao Meng , Aiwei Liu , Lijie Wen

Open Named Entity Recognition (NER), which involves identifying arbitrary types of entities from arbitrary domains, remains challenging for Large Language Models (LLMs). Recent studies suggest that fine-tuning LLMs on extensive NER data can…

Named entity recognition (NER) task aims at identifying entities from a piece of text that belong to predefined semantic types such as person, location, organization, etc. The state-of-the-art solutions for flat entities NER commonly suffer…

Computation and Language · Computer Science 2022-08-08 Jianlin Su , Ahmed Murtadha , Shengfeng Pan , Jing Hou , Jun Sun , Wanwei Huang , Bo Wen , Yunfeng Liu

Despite advancements of end-to-end (E2E) models in speech recognition, named entity recognition (NER) is still challenging but critical for semantic understanding. Previous studies mainly focus on various rule-based or attention-based…

Audio and Speech Processing · Electrical Eng. & Systems 2024-06-11 Peng Wang , Yifan Yang , Zheng Liang , Tian Tan , Shiliang Zhang , Xie Chen

Named Entity Recognition (NER) on social media refers to discovering and classifying entities from unstructured free-form content, and it plays an important role for various applications such as intention understanding and user…

Computer Vision and Pattern Recognition · Computer Science 2022-11-22 Peipei Liu , Gaosheng Wang , Hong Li , Jie Liu , Yimo Ren , Hongsong Zhu , Limin Sun

Graph Neural Networks (GNNs) have demonstrated impressive performance on task-specific benchmarks, yet their ability to generalize across diverse domains and tasks remains limited. Existing approaches often struggle with negative transfer,…

Machine Learning · Computer Science 2025-11-06 Zhibin Wang , Zhixing Zhang , Shuqi Wang , Xuanting Xie , Zhao Kang

Graphs are ubiquitous in real-world scenarios and encompass a diverse range of tasks, from node-, edge-, and graph-level tasks to transfer learning. However, designing specific tasks for each type of graph data is often costly and lacks…

Machine Learning · Computer Science 2024-03-22 Yulan Hu , Sheng Ouyang , Zhirui Yang , Ge Chen , Junchen Wan , Xiao Wang , Yong Liu

We introduce FewTopNER, a novel framework that integrates few-shot named entity recognition (NER) with topic-aware contextual modeling to address the challenges of cross-lingual and low-resource scenarios. FewTopNER leverages a shared…

Computation and Language · Computer Science 2025-02-05 Ibrahim Bouabdallaoui , Fatima Guerouate , Samya Bouhaddour , Chaimae Saadi , Mohammed Sbihi

Named entity recognition (NER) is a fundamental task in natural language processing that involves identifying and classifying entities in sentences into pre-defined types. It plays a crucial role in various research fields, including entity…

Computation and Language · Computer Science 2024-04-29 Dongsheng Wang , Xiaoqin Feng , Zeming Liu , Chuan Wang

Biomedical named entity recognition (BNER) serves as the foundation for numerous biomedical text mining tasks. Unlike general NER, BNER require a comprehensive grasp of the domain, and incorporating external knowledge beyond training data…

Computation and Language · Computer Science 2023-07-06 Junyi Bian , Rongze Jiang , Weiqi Zhai , Tianyang Huang , Hong Zhou , Shanfeng Zhu

Entity embeddings, which represent different aspects of each entity with a single vector like word embeddings, are a key component of neural entity linking models. Existing entity embeddings are learned from canonical Wikipedia articles and…

Computation and Language · Computer Science 2021-06-17 Feng Hou , Ruili Wang , Jun He , Yi Zhou

Accurate recognition of biomedical named entities is critical for medical information extraction and knowledge discovery. However, existing methods often struggle with nested entities, entity boundary ambiguity, and cross-lingual…

Computation and Language · Computer Science 2025-10-13 Tengxiao Lv , Ling Luo , Juntao Li , Yanhua Wang , Yuchen Pan , Chao Liu , Yanan Wang , Yan Jiang , Huiyi Lv , Yuanyuan Sun , Jian Wang , Hongfei Lin

Most existing named entity recognition (NER) approaches are based on sequence labeling models, which focus on capturing the local context dependencies. However, the way of taking one sentence as input prevents the modeling of non-sequential…

Computation and Language · Computer Science 2021-06-03 Zanbo Wang , Wei Wei , Xianling Mao , Shanshan Feng , Pan Zhou , Zhiyong He , Sheng Jiang

Multimodal Named Entity Recognition (MNER) on social media aims to enhance textual entity prediction by incorporating image-based clues. Existing studies mainly focus on maximizing the utilization of pertinent image information or…

Computation and Language · Computer Science 2023-10-19 Jinyuan Li , Han Li , Zhuo Pan , Di Sun , Jiahao Wang , Wenkun Zhang , Gang Pan

Named entity recognition is a traditional task in natural language processing. In particular, nested entity recognition receives extensive attention for the widespread existence of the nesting scenario. The latest research migrates the…

Computation and Language · Computer Science 2023-05-23 Xueru Wen , Changjiang Zhou , Haotian Tang , Luguang Liang , Yu Jiang , Hong Qi

Named entity recognition (NER) is evolving from a sequence labeling task into a generative paradigm with the rise of large language models (LLMs). We conduct a systematic evaluation of open-source LLMs on both flat and nested NER tasks. We…

Computation and Language · Computer Science 2026-01-27 Qi Zhan , Yile Wang , Hui Huang