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Inferring causal relationships between variable pairs is crucial for understanding multivariate interactions in complex systems. Knowledge-based causal discovery -- which involves inferring causal relationships by reasoning over the…

Artificial Intelligence · Computer Science 2025-06-11 Yuni Susanti , Michael Färber

Identifying causative genes from patient phenotypes remains a significant challenge in precision medicine, with important implications for the diagnosis and treatment of genetic disorders. We propose a novel graph-based approach for…

Machine Learning · Computer Science 2025-06-17 Kamilia Zaripova , Ege Özsoy , Nassir Navab , Azade Farshad

Large language models (LLMs) show promise for diagnostic reasoning but often lack reliable, knowledge grounded inference. Knowledge graphs (KGs), such as the Unified Medical Language System (UMLS), offer structured biomedical knowledge that…

Computation and Language · Computer Science 2025-09-24 Saksham Khatwani , He Cheng , Majid Afshar , Dmitriy Dligach , Yanjun Gao

Large Language Models (LLMs) have shown remarkable capabilities across various tasks but remain prone to hallucinations in knowledge-intensive scenarios. Knowledge Base Question Answering (KBQA) mitigates this by grounding generation in…

Computation and Language · Computer Science 2026-04-15 Shuai Wang , Xixi Wang , Yinan Yu

Commonsense knowledge-graphs (CKGs) are important resources towards building machines that can 'reason' on text or environmental inputs and make inferences beyond perception. While current CKGs encode world knowledge for a large number of…

Computation and Language · Computer Science 2022-12-19 Shantanu Jaiswal , Liu Yan , Dongkyu Choi , Kenneth Kwok

Recent advancements in Large Language Models (LLMs) have showcased their proficiency in answering natural language queries. However, their effectiveness is hindered by limited domain-specific knowledge, raising concerns about the…

Integrating knowledge graphs (KGs) to enhance the reasoning capabilities of large language models (LLMs) is an emerging research challenge in claim verification. While KGs provide structured, semantically rich representations well-suited…

Computation and Language · Computer Science 2025-05-29 Hoang Pham , Thanh-Do Nguyen , Khac-Hoai Nam Bui

Knowledge graphs (KGs) enhance the performance of large language models (LLMs) and search engines by providing structured, interconnected data that improves reasoning and context-awareness. However, KGs only focus on text data, thereby…

Computation and Language · Computer Science 2024-08-09 Khai Le-Duc , Quy-Anh Dang , Tan-Hanh Pham , Truong-Son Hy

Large language models (LLMs) typically improve performance by either retrieving semantically similar information, or enhancing reasoning abilities through structured prompts like chain-of-thought. While both strategies are considered…

Computation and Language · Computer Science 2024-10-16 Yejin Kim , Eojin Kang , Juae Kim , H. Howie Huang

In real-world scenarios, most of the data obtained from the information retrieval (IR) system is unstructured. Converting natural language sentences into structured Knowledge Graphs (KGs) remains a critical challenge. We identified three…

Computation and Language · Computer Science 2025-09-29 Haoyu Huang , Chong Chen , Zeang Sheng , Yang Li , Wentao Zhang

The problem of answering questions using knowledge from pre-trained language models (LMs) and knowledge graphs (KGs) presents two challenges: given a QA context (question and answer choice), methods need to (i) identify relevant knowledge…

Computation and Language · Computer Science 2022-12-14 Michihiro Yasunaga , Hongyu Ren , Antoine Bosselut , Percy Liang , Jure Leskovec

Reasoning over knowledge graphs (KGs) is a challenging task that requires a deep understanding of the complex relationships between entities and the underlying logic of their relations. Current approaches rely on learning geometries to…

Logic in Computer Science · Computer Science 2024-04-02 Nurendra Choudhary , Chandan K. Reddy

Knowledge graphs (KGs) are valuable for representing structured, interconnected information across domains, enabling tasks like semantic search, recommendation systems and inference. A pertinent challenge with KGs, however, is that many…

Computation and Language · Computer Science 2024-12-17 Haji Gul , Abdul Ghani Naim , Ajaz A. Bhat

Incorporating factual knowledge into pre-trained language models (PLM) such as BERT is an emerging trend in recent NLP studies. However, most of the existing methods combine the external knowledge integration module with a modified…

Computation and Language · Computer Science 2022-05-06 Yinquan Lu , Haonan Lu , Guirong Fu , Qun Liu

Large Language Models (LLMs) excel at language understanding but remain limited in knowledge-intensive domains due to hallucinations, outdated information, and limited explainability. Text-based retrieval-augmented generation (RAG) helps…

Computation and Language · Computer Science 2026-02-09 Larissa Pusch , Alexandre Courtiol , Tim Conrad

Over the years, reasoning over knowledge graphs (KGs), which aims to infer new conclusions from known facts, has mostly focused on static KGs. The unceasing growth of knowledge in real life raises the necessity to enable the inductive…

Computation and Language · Computer Science 2022-09-15 Yuanning Cui , Yuxin Wang , Zequn Sun , Wenqiang Liu , Yiqiao Jiang , Kexin Han , Wei Hu

Multi-paragraph reasoning is indispensable for open-domain question answering (OpenQA), which receives less attention in the current OpenQA systems. In this work, we propose a knowledge-enhanced graph neural network (KGNN), which performs…

Computation and Language · Computer Science 2019-11-07 Deming Ye , Yankai Lin , Zhenghao Liu , Zhiyuan Liu , Maosong Sun

Feature selection in Knowledge Graphs (KGs) are increasingly utilized in diverse domains, including biomedical research, Natural Language Processing (NLP), and personalized recommendation systems. This paper delves into the methodologies…

Machine Learning · Computer Science 2024-06-24 Sisi Shao , Pedro Henrique Ribeiro , Christina Ramirez , Jason H. Moore

While large language models (LLMs) have made considerable advancements in understanding and generating unstructured text, their application in structured data remains underexplored. Particularly, using LLMs for complex reasoning tasks on…

Computation and Language · Computer Science 2023-10-18 Jiho Kim , Yeonsu Kwon , Yohan Jo , Edward Choi

Causal discovery aims to estimate causal structures among variables based on observational data. Large Language Models (LLMs) offer a fresh perspective to tackle the causal discovery problem by reasoning on the metadata associated with…

Computation and Language · Computer Science 2024-07-31 Yuni Susanti , Michael Färber