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The Model Context Protocol has emerged as a transformative standard for connecting large language models to external data sources and tools, rapidly gaining adoption across major AI providers and development platforms. However, existing…

Artificial Intelligence · Computer Science 2025-08-21 Ziyang Luo , Zhiqi Shen , Wenzhuo Yang , Zirui Zhao , Prathyusha Jwalapuram , Amrita Saha , Doyen Sahoo , Silvio Savarese , Caiming Xiong , Junnan Li

The Model Context Protocol (MCP) enables Large Language Models (LLMs) to interact with external tools via tool descriptors, thereby extending their capabilities for task execution, autonomous decision-making, and multi-agent coordination.…

Cryptography and Security · Computer Science 2026-05-22 Saeid Jamshidi , Arghavan Moradi Dakhel , Kawser Wazed Nafi , Foutse Khomh

The Model Context Protocol (MCP) standardizes how a large-language-model (LLM) agent and an external tool server exchange messages, but not trust: a host reads a server's self-declared tool list and dispatches calls, with no notion of which…

Cryptography and Security · Computer Science 2026-05-26 Alfredo Metere

Large language model (LLM) agents are vulnerable to prompt-injection attacks that propagate through multi-step workflows, tool interactions, and persistent context, making input-output filtering alone insufficient for reliable protection.…

Artificial Intelligence · Computer Science 2026-04-21 Hailin Liu , Eugene Ilyushin , Jie Ni , Min Zhu

Bioinformatics tools are essential for complex computational biology tasks, yet their integration with emerging AI-agent frameworks is hindered by incompatible interfaces, heterogeneous input-output formats, and inconsistent parameter…

Quantitative Methods · Quantitative Biology 2025-10-03 Florensia Widjaja , Zhangtianyi Chen , Juexiao Zhou

Autonomous AI agents powered by large language models (LLMs) with structured function-calling interfaces enable real-time data retrieval, computation, and multi-step orchestration. However, the rapid growth of plugins, connectors, and…

Cryptography and Security · Computer Science 2025-12-16 Mohamed Amine Ferrag , Norbert Tihanyi , Djallel Hamouda , Leandros Maglaras , Abderrahmane Lakas , Merouane Debbah

Agent tools are becoming a core interface through which LLM agents access external data, services, and execution environments. As these tools are distributed through public marketplaces, raw tool counts may substantially overstate ecosystem…

Software Engineering · Computer Science 2026-05-19 Taein Kim , David Jiang , Yuepeng Hu , Yuqi Jia , Neil Gong

Large language model (LLM)-based agents are increasingly used to perform complex, multi-step workflows in regulated settings such as compliance and due diligence. However, many agentic architectures rely primarily on prompt engineering of a…

Artificial Intelligence · Computer Science 2026-02-03 Ananya Joshi , Michael Rudow

Agentic workflows driven by large language models (LLMs) are increasingly applied to Building Information Modelling (BIM), enabling natural-language retrieval, modification and generation of IFC models. Recent work has begun adopting the…

Other Computer Science · Computer Science 2026-03-31 Tobias Heimig-Elschner , Changyu Du , Anna Scheuvens , André Borrmann , Jakob Beetz

Cybersecurity has become one of the earliest adopters of agentic AI, as security operations centers increasingly rely on multi-step reasoning, tool-driven analysis, and rapid decision-making under pressure. While individual large language…

Cryptography and Security · Computer Science 2025-12-09 Vaishali Vinay

Control evaluations measure whether monitoring and security protocols for AI systems prevent intentionally subversive AI models from causing harm. Our work presents the first control evaluation performed in an agent environment. We…

Machine Learning · Computer Science 2025-04-15 Aryan Bhatt , Cody Rushing , Adam Kaufman , Tyler Tracy , Vasil Georgiev , David Matolcsi , Akbir Khan , Buck Shlegeris

Tool-using LLM agents increasingly coordinate real workloads by selecting and chaining third-party tools based on text-visible metadata such as tool names, descriptions, and return messages. We show that this convenience creates a…

Computation and Language · Computer Science 2026-02-17 Yohan Lee , Jisoo Jang , Seoyeon Choi , Sangyeop Kim , Seungtaek Choi

Machine learning (ML) underpins foundation models in finance, healthcare, and critical infrastructure, making them targets for data poisoning, model extraction, prompt injection, automated jailbreaking, and preference-guided black-box…

Cryptography and Security · Computer Science 2025-12-30 Armstrong Foundjem , Lionel Nganyewou Tidjon , Leuson Da Silva , Foutse Khomh

The rise of tool-using Large Language Model (LLM) agents, standardized by protocols like the Model Context Protocol (MCP), has unlocked unprecedented autonomous execution capabilities for LLM Agents by integrating external open-domain…

Cryptography and Security · Computer Science 2026-05-26 Shi Liu , Xuehai Tang , Xikang Yang , Liang Lin , Biyu Zhou , Wenjie Xiao , Wantao Liu

General-purpose agents perform tasks in unfamiliar environments without domain-specific manual customization. Yet no study has systematically measured how agent architecture shapes performance across heterogeneous protocols and diverse…

Large language models deployed as agents increasingly interact with external systems through tool calls--actions with real-world consequences that text outputs alone do not carry. Safety evaluations, however, overwhelmingly measure…

Artificial Intelligence · Computer Science 2026-02-20 Arnold Cartagena , Ariane Teixeira

The rapid deployment of autonomous AI agents across enterprise, healthcare, and safety-critical environments has created a fundamental governance gap. Existing approaches, runtime guardrails, training-time alignment, and post-hoc auditing…

Agentic AI systems plan, use tools, maintain state, and produce multi-step trajectories with external effects. Those properties create a governance problem that differs materially from single-turn generative AI: important risks emerge dur-…

Artificial Intelligence · Computer Science 2026-04-08 Christopher Koch

Large Language Models (LLMs) are increasingly serving as autonomous agents, and their utilization of external tools via the Model Context Protocol (MCP) is considered a future trend. Current MCP evaluation sets suffer from issues such as…

Artificial Intelligence · Computer Science 2026-01-22 Wenrui Liu , Zixiang Liu , Elsie Dai , Wenhan Yu , Lei Yu , Tong Yang , Jinjun Han , Hong Gao

Agentic AI marks a major shift in how autonomous systems reason, plan, and execute multi-step tasks. Unlike traditional single model prompting, agentic workflows integrate multiple specialized agents with different Large Language…