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We propose a new architecture for 3D information systems that takes advantage of the inherent parallelism of the GPUs. This new solution structures information as thematic layers, allowing a level of detail independent of the resolution of…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-01-28 Luis López , Juan Carlos Torres , Germán Arroyo , Pedro Cano , Domingo Martín

Data series indexes are necessary for managing and analyzing the increasing amounts of data series collections that are nowadays available. These indexes support both exact and approximate similarity search, with approximate search…

Databases · Computer Science 2023-04-18 Zeyu Wang , Qitong Wang , Peng Wang , Themis Palpanas , Wei Wang

Efficient text indexing data structures have enabled large-scale genomic sequence analysis and are used to help solve problems ranging from assembly to read mapping. However, these data structures typically assume that the underlying…

Genomics · Quantitative Biology 2016-04-13 Nitish Gupta , Komal Sanjeev , Tim Wall , Carl Kingsford , Rob Patro

Modern GPUs adopt chiplet-based designs with multiple private cache hierarchies, but current programming models (CUDA/HIP) expose a flat execution hierarchy that cannot express chiplet-level locality or synchronization. This mismatch leads…

The Breadth First Search (BFS) algorithm is the foundation and building block of many higher graph-based operations such as spanning trees, shortest paths and betweenness centrality. The importance of this algorithm increases each day due…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-04-04 Julian Romera

Maintaining computational load balance is important to the performant behavior of codes which operate under a distributed computing model. This is especially true for GPU architectures, which can suffer from memory oversubscription if…

Distributed, Parallel, and Cluster Computing · Computer Science 2021-11-05 Michael E. Rowan , Axel Huebl , Kevin N. Gott , Jack Deslippe , Maxence Thévenet , Remi Lehe , Jean-Luc Vay

Indexes provide a method to access data in databases quickly. It can improve the response speed of subsequent queries by building a complete index in advance. However, it also leads to a huge overhead of the continuous updating during…

Databases · Computer Science 2019-11-27 Gang Wu , Yidong Song , Guodong Zhao , Wei Sun , Donghong Han , Baiyou Qiao , Guoren Wang , Ye Yuan

I present a new GPU implementation of the wavelet tree data structure. It includes binary rank and select support structures that provide at least 10 times higher throughput of binary rank and select queries than the best publicly available…

Data Structures and Algorithms · Computer Science 2025-05-07 Marco Franzreb , Martin Burtscher , Stephan Rudolph

Breadth-first search (BFS) is a fundamental graph algorithm that presents significant challenges for parallel implementation due to irregular memory access patterns, load imbalance and synchronization overhead. In this paper, we introduce a…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-03-04 Marati Bhaskar , Raghavendra Kanakagiri

Since the release of human genome sequences, one of the most important research issues is about indexing the genome sequences, and the suffix tree is most widely adopted for that purpose. The traditional suffix tree construction algorithms…

Databases · Computer Science 2015-05-20 Woong-Kee Loh , Yang-Sae Moon , Wookey Lee

Distributed filesystem metadata updates are typically synchronous. This creates inherent challenges for access efficiency, load balancing, and directory contention, especially under dynamic and skewed workloads. This paper argues that…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-01-01 Jingwei Xu , Mingkai Dong , Qiulin Tian , Ziyi Tian , Tong Xin , Haibo Chen

We study index-based processing for connectivity queries within sliding windows on streaming graphs. These queries, which determine whether two vertices belong to the same connected component, are fundamental operations in real-time graph…

Databases · Computer Science 2024-06-14 Chao Zhang , Angela Bonifati , M. Tamer Özsu

We design and implement a fully concurrent dynamic hash table for GPUs with comparable performance to the state of the art static hash tables. We propose a warp-cooperative work sharing strategy that reduces branch divergence and provides…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-03-05 Saman Ashkiani , Martin Farach-Colton , John D. Owens

Sorting and binary searching a dense array can be considered the simplest and most space efficient form of indexing. This holds especially on GPUs as they exhibit exceptional sorting performance. However, the popular opinion is that such a…

Databases · Computer Science 2026-02-24 Justus Henneberg , Felix Schuhknecht

Recent work on "learned indexes" has changed the way we look at the decades-old field of DBMS indexing. The key idea is that indexes can be thought of as "models" that predict the position of a key in a dataset. Indexes can, thus, be…

Multisplit is a broadly useful parallel primitive that permutes its input data into contiguous buckets or bins, where the function that categorizes an element into a bucket is provided by the programmer. Due to the lack of an efficient…

Distributed, Parallel, and Cluster Computing · Computer Science 2017-09-08 Saman Ashkiani , Andrew Davidson , Ulrich Meyer , John D. Owens

Basic Linear Algebra Subprograms (BLAS) are a set of low level linear algebra kernels widely adopted by applications involved with the deep learning and scientific computing. The massive and economic computing power brought forth by the…

Distributed, Parallel, and Cluster Computing · Computer Science 2015-10-20 Linnan Wang , Wei Wu , Jianxiong Xiao , Yi Yang

Serving Large Language Models (LLMs) in production faces significant challenges from highly variable request patterns and severe resource fragmentation in serverless clusters. Current systems rely on static pipeline configurations that…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-05-12 Yanying Lin , Shijie Peng , Chengzhi Lu , Chengzhong Xu , Kejiang Ye

Deploying a large language model (LLM) inference service remains costly because centralized serving depends on specialized GPU clusters and high-bandwidth interconnects in datacenters. An appealing alternative is to leverage collaborative…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-10-01 Chris Tong , Youhe Jiang , Gufeng Chen , Tianyi Zhao , Sibian Lu , Wenjie Qu , Eric Yang , Lynn Ai , Binhang Yuan

Indexing is an effective way to support efficient query processing in large databases. Recently the concept of learned index, which replaces or complements traditional index structures with machine learning models, has been actively…

Databases · Computer Science 2022-08-01 Yao Tian , Tingyun Yan , Xi Zhao , Kai Huang , Xiaofang Zhou