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Motivation: The size of available omics datasets is steadily increasing with technological advancement in recent years. While this increase in sample size can be used to improve the performance of relevant prediction tasks in healthcare,…

Quantitative Methods · Quantitative Biology 2023-05-04 Jonas C. Ditz , Bernhard Reuter , Nico Pfeifer

Transformer language models are state of the art in a multitude of NLP tasks. Despite these successes, their opaqueness remains problematic. Recent methods aiming to provide interpretability and explainability to black-box models primarily…

Computation and Language · Computer Science 2022-03-14 Felix Friedrich , Patrick Schramowski , Christopher Tauchmann , Kristian Kersting

Kernel methods have produced state-of-the-art results for a number of NLP tasks such as relation extraction, but suffer from poor scalability due to the high cost of computing kernel similarities between natural language structures. A…

Computation and Language · Computer Science 2019-05-22 Sahil Garg , Aram Galstyan , Greg Ver Steeg , Irina Rish , Guillermo Cecchi , Shuyang Gao

The deployment of Machine Learning models intraoperatively for tissue characterisation can assist decision making and guide safe tumour resections. For image classification models, pixel attribution methods are popular to infer…

Computer Vision and Pattern Recognition · Computer Science 2025-08-01 Alfie Roddan , Chi Xu , Serine Ajlouni , Irini Kakaletri , Patra Charalampaki , Stamatia Giannarou

There has been a significant surge of interest recently around the concept of explainable artificial intelligence (XAI), where the goal is to produce an interpretation for a decision made by a machine learning algorithm. Of particular…

Machine Learning · Computer Science 2019-10-31 Zhong Qiu Lin , Mohammad Javad Shafiee , Stanislav Bochkarev , Michael St. Jules , Xiao Yu Wang , Alexander Wong

Complex questions that require inferencing and synthesizing information from multiple documents can be seen as a kind of topic-oriented, informative multi-document summarization where the goal is to produce a single text as a compressed…

Computation and Language · Computer Science 2014-01-16 Yllias Chali , Shafiq Rayhan Joty , Sadid A. Hasan

Embedding-based code retrieval often suffers when encoders overfit to surface syntax. Prior work mitigates this by using LLMs to rephrase queries and corpora into a normalized style, but leaves two questions open: how much representational…

Software Engineering · Computer Science 2026-05-12 Andrea Gurioli , Federico Pennino , Maurizio Gabbrielli

Leveraging deep learning for causal discovery in time series remains challenging because existing neural methods predominantly rely on component-wise architectures that fail to capture shared system dynamics or employ decoupled post-hoc…

Machine Learning · Computer Science 2026-05-11 Omar Muhammad , Pasupuleti Dhruv Shivkant , Deepak N. Subramani

Masked Image Modeling (MIM) achieves outstanding success in self-supervised representation learning. Unfortunately, MIM models typically have huge computational burden and slow learning process, which is an inevitable obstacle for their…

Computer Vision and Pattern Recognition · Computer Science 2023-03-10 Haoqing Wang , Yehui Tang , Yunhe Wang , Jianyuan Guo , Zhi-Hong Deng , Kai Han

We propose a new technique for constructing low-rank approximations of matrices that arise in kernel methods for machine learning. Our approach pairs a novel automatically constructed analytic expansion of the underlying kernel function…

Machine Learning · Computer Science 2022-02-09 John Paul Ryan , Anil Damle

Most machine learning (ML) models are developed for prediction only; offering no option for causal interpretation of their predictions or parameters/properties. This can hamper the health systems' ability to employ ML models in clinical…

Large language models (LLMs) have demonstrated broad utility across molecular domains, spanning drug discovery and materials design. Analyzing LLMs' latent representations is crucial for elucidating their underlying mechanisms, improving…

Machine Learning · Computer Science 2026-02-03 Zhuoran Li , Xu Sun , Wanyu Lin , Jiannong Cao

Multilayer (or deep) networks are powerful probabilistic models based on multiple stages of a linear transform followed by a non-linear (possibly random) function. In general, the linear transforms are defined by matrices and the non-linear…

Information Theory · Computer Science 2017-10-13 Galen Reeves

Deep neural networks and other intricate Artificial Intelligence (AI) models have reached high levels of accuracy on many biomedical natural language processing tasks. However, their applicability in real-world use cases may be limited due…

Artificial Intelligence · Computer Science 2020-10-22 Milad Moradi , Matthias Samwald

This paper provides empirical concerns about post-hoc explanations of black-box ML models, one of the major trends in AI explainability (XAI), by showing its lack of interpretability and societal consequences. Using a representative…

Human-Computer Interaction · Computer Science 2021-10-01 Jean-Marie John-Mathews

Feature attributions and counterfactual explanations are popular approaches to explain a ML model. The former assigns an importance score to each input feature, while the latter provides input examples with minimal changes to alter the…

Machine Learning · Computer Science 2021-06-01 Ramaravind Kommiya Mothilal , Divyat Mahajan , Chenhao Tan , Amit Sharma

Counterfactual explanation (CE) is a widely used post-hoc method that provides individuals with actionable changes to alter an unfavorable prediction from a machine learning model. Plausible CE methods improve realism by considering data…

Machine Learning · Computer Science 2025-09-25 Trung Nguyen Thanh , Huyen Giang Thi Thu , Tai Le Quy , Ha-Bang Ban

Large Language Models (LLMs) excel at extracting common patterns from large-scale corpora, yet they struggle with rare, low-resource, or previously unseen scenarios-such as niche hardware deployment issues or irregular IoT device…

Computation and Language · Computer Science 2025-12-23 Hong Su

We consider a setting where a stream of qubits is processed sequentially. We derive fundamental limits on the rate at which classical information can be transmitted using qubits that decohere as they wait to be processed. Specifically, we…

Information Theory · Computer Science 2020-08-11 Prabha Mandayam , Krishna Jagannathan , Avhishek Chatterjee

Large Language Models (LLMs) have demonstrated strong performance as knowledge repositories, enabling models to understand user queries and generate accurate and context-aware responses. Extensive evaluation setups have corroborated the…

Computation and Language · Computer Science 2024-11-19 Prasoon Bajpai , Sarah Masud , Tanmoy Chakraborty
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