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LLMs are increasingly used to draft academic text and to support software engineering (SE) evidence synthesis, but they often hallucinate bibliographic references that look legitimate. We study how deployment-motivated prompting constraints…

Information Retrieval · Computer Science 2026-03-10 Chen Zhao , Yuan Tang , Yitian Qian

Background. Reproducibility is essential to the scientific method, but reproduction is often a laborious task. Recent works have attempted to automate this process and relieve researchers of this workload. However, due to varying…

Computers and Society · Computer Science 2026-01-09 Thijs Snelleman , Peter Lundestad Lawrence , Holger H. Hoos , Odd Erik Gundersen

Challenges to reproducibility and replicability have gained widespread attention, driven by large replication projects with lukewarm success rates. A nascent work has emerged developing algorithms to estimate the replicability of published…

Digital Libraries · Computer Science 2024-05-06 Chuhao Wu , Tatiana Chakravorti , John Carroll , Sarah Rajtmajer

Explanations of the replication crisis often emphasize misconduct, questionable research practices, or incentive misalignment, implying that behavioral reform is sufficient. This paper argues that a substantial component is architectural:…

Methodology · Statistics 2026-03-05 Marco Pollanen

Large language models are increasingly capable at closed-world mathematical reasoning, but research assistance also requires source-grounded use of the literature. When a proof reaches a non-trivial step, a useful assistant should determine…

Artificial Intelligence · Computer Science 2026-05-12 Zicheng Lyu , Wenjie Yang , Shengzhong Zhang , Zengfeng Huang

Large language models (LLMs) are increasingly used to solve complex tasks where they must retrieve and compose many pieces of in-context information in long reasoning chains. For many real-world tasks it is hard to accurately gauge how…

Computation and Language · Computer Science 2026-04-29 Jackson Petty , Michael Y. Hu , Wentao Wang , Shauli Ravfogel , William Merrill , Tal Linzen

Recent studies have shown that the majority of published computational models in systems biology and physiology are not repeatable or reproducible. There are a variety of reasons for this. One of the most likely reasons is that given how…

Other Quantitative Biology · Quantitative Biology 2021-07-13 Herbert M. Sauro

The scholarly publishing ecosystem faces a dual crisis of unmanageable submission volumes and unregulated AI, creating an urgent need for new governance models to safeguard scientific integrity. The traditional human-only peer review regime…

Artificial Intelligence · Computer Science 2025-10-03 Khalid M. Saqr

The reproduction and replication of research results has become a major issue for a number of scientific disciplines. In computer science and related computational disciplines such as systems biology, the challenges closely revolve around…

Software Engineering · Computer Science 2017-07-31 Tom Crick , Benjamin A. Hall , Samin Ishtiaq

Artificial Intelligence (AI) is poised to enable a new leap in the creation of scholarly content. New forms of engagement with AI systems, such as collaborations with large language models like GPT-3, offer affordances that will change the…

Computers and Society · Computer Science 2023-05-19 Bill Tomlinson , Andrew W. Torrance , Rebecca W. Black , Donald J. Patterson

Evaluating knowledge systems (LLMs, RAG, knowledge graphs, etc) faces fundamental challenges: static benchmarks are vulnerable to contamination, LLM-based judges exhibit systematic biases, and ground truth extraction requires expensive…

Computation and Language · Computer Science 2026-01-16 JV Roig

AI-based systems, currently driven largely by LLMs and tool-using agentic harnesses, are increasingly discussed as a possible threat to software engineering. Foundation models get stronger, agents can plan and act across multiple steps, and…

Software Engineering · Computer Science 2026-04-24 Robert Feldt , Per Lenberg , Julian Frattini , Dhasarathy Parthasarathy

Large language models (LLMs) have grown in their usage to provide support for question answering across numerous disciplines. The models on their own have already shown promise for answering basic questions, however fail quickly where…

Information Retrieval · Computer Science 2025-04-15 David Brett , Anniek Myatt

Long-context understanding has emerged as a critical capability for large language models (LLMs). However, evaluating this ability remains challenging. We present SCALAR, a benchmark designed to assess citation-grounded long-context…

Computation and Language · Computer Science 2026-01-23 Renxi Wang , Honglin Mu , Liqun Ma , Lizhi Lin , Yunlong Feng , Timothy Baldwin , Xudong Han , Haonan Li

The mechanisms underlying scientific confabulation in Large Language Models (LLMs) remain poorly understood. We introduce ReFACT (Reddit False And Correct Texts), a benchmark of 1,001 expert-annotated question-answer pairs with span-level…

Computation and Language · Computer Science 2026-04-24 Yindong Wang , Martin Preiß , Margarita Bugueño , Jan Vincent Hoffbauer , Abdullatif Ghajar , Tolga Buz , Gerard de Melo

The reproducibility of scientific articles is central to the advancement of science. Despite this importance, evaluating reproducibility remains challenging due to the scarcity of ground truth data. Predictive models can address this…

Digital Libraries · Computer Science 2024-10-25 Akhil Pandey Akella , Sagnik Ray Choudhury , David Koop , Hamed Alhoori

Computational reproducibility is fundamental to trustworthy science, yet remains difficult to achieve in practice across various research workflows, including Jupyter notebooks published alongside scholarly articles. Environment drift,…

Software Engineering · Computer Science 2026-04-02 Sheeba Samuel , Daniel Mietchen , Hemanta Lo , Martin Gaedke

Digital libraries curate millions of research software artefacts yet lack scalable infrastructure for assessing whether those artefacts remain executable. Existing automated assessment tools treat static repository completeness -- what a…

Software Engineering · Computer Science 2026-05-14 Sheeba Samuel , Daniel Mietchen , Jungsan Kim , Waqas Ahmed , Martin Gaedke

Expert-level scientific reasoning remains challenging for large language models, particularly on benchmarks such as Humanity's Last Exam (HLE), where rigid tool pipelines, brittle multi-agent coordination, and inefficient test-time scaling…

Artificial Intelligence · Computer Science 2026-02-05 Zhentao Tang , Yuqi Cui , Shixiong Kai , Wenqian Zhao , Ke Ye , Xing Li , Anxin Tian , Zehua Pei , Hui-Ling Zhen , Shoubo Hu , Xiaoguang Li , Yunhe Wang , Mingxuan Yuan

Large Language Models (LLMs) are notorious for blending fact with fiction and generating non-factual content, known as hallucinations. To address this challenge, we propose an interactive system that helps users gain insight into the…

Human-Computer Interaction · Computer Science 2024-04-05 Furui Cheng , Vilém Zouhar , Simran Arora , Mrinmaya Sachan , Hendrik Strobelt , Mennatallah El-Assady
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