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Recent observations of the growth of protein crystals have identified two different growth regimes. At low supersaturation, the surface of the crystal is smooth and increasing in size due to the nucleation of steps at defects and the…

Soft Condensed Matter · Physics 2015-05-14 James F. Lutsko , Vasileios Basios , Gregoire Nicolis , John J. Kozak , Mike Sleutel , Dominique Maes

We show that the oscillatory driving of crystal surfaces can induce pattern formation or smoothening. The driving force can be of quite different origin such as a pulsed laser beam, an electric field, or elasticity. Depending on driving…

Statistical Mechanics · Physics 2009-10-31 O. Pierre-Louis , M. I. Haftel

We have studied two types of meshwork models by using the canonical Monte Carlo simulation technique. The first meshwork model has elastic junctions, which are composed of vertices, bonds, and triangles, while the second model has rigid…

Statistical Mechanics · Physics 2007-10-25 Hiroshi Koibuchi

Banded patterns consisting of alternating bare soil and dense vegetation have been observed in water-limited ecosystems across the globe, often appearing along gently sloped terrain with the stripes aligned transverse to the elevation…

Pattern Formation and Solitons · Physics 2023-06-16 Punit Gandhi , Lucien Werner , Sarah Iams , Karna Gowda , Mary Silber

We report a Lagrangian study on the evolution of material surfaces in the K-type temporal transitional channel flow. Based on the Eulerian velocity field from the DNS, a backward-particle-tracking method is applied to solve the transport…

Fluid Dynamics · Physics 2016-04-20 Yaomin Zhao , Yue Yang , Shiyi Chen

Granular materials such as sand, powders, and grains are omnipresent in daily life, industrial applications, and earth-science [1]. When unperturbed, they form stable structures that resemble the ones of other amorphous solids like metallic…

Soft Condensed Matter · Physics 2023-01-19 Ye Yuan , Zhikun Zeng , Yi Xing , Houfei Yuan , Shuyang Zhang , Walter Kob , Yujie Wang

Surfaces eroded by ion-sputtering are sometimes observed to develop morphologies which are either ripple (periodic), or rough (non-periodic). We introduce a discrete stochastic model that allows us to interpret these experimental…

Mounding instability in a conserved growth from vapor is analysed within the framework of adatom kinetics on the growing surface. The analysis shows that depending on the local structure on the surface, kinetics of adatoms may vary, leading…

Soft Condensed Matter · Physics 2009-11-07 S. V. Ghaisas

A surface model on compartmentalized spheres is studied by using the Monte Carlo simulation technique with dynamical triangulations. We found that the model exhibits a variety of phases: the spherical phase, the tubular phase, the planar…

Statistical Mechanics · Physics 2007-12-06 Hiroshi Koibuchi

Natural slender structures, such as plant leaves, petals, and tendrils, often exhibit complex three-dimensional (3D) morphologies-including twisting, helical coiling, and saddle-bending-driven by differential growth. The resulting internal…

Soft Condensed Matter · Physics 2025-06-24 Hao Liu , Mingwu Li , Dabiao Liu

In this work we analyze a class of Moir\'e models consisting of an active honeycomb monolayer such as graphene or a hexagonal transition-metal dichalcogenide (TMD) on top of a substrate, in which the K and K' valleys of the active layer are…

Mesoscale and Nanoscale Physics · Physics 2025-06-03 Abhijat Sarma

A model for two-dimensional colloids confined laterally by "structured boundaries" (i.e., ones that impose a periodicity along the slit) is studied by Monte Carlo simulations. When the distance D between the confining walls is reduced at…

Statistical Mechanics · Physics 2012-03-09 Dorothea Wilms , Nigel B. Wilding , Kurt Binder

We study a recently proposed nonlinear evolution equation describing the collective step meander on a vicinal surface subject to the Bales-Zangwill growth instability [O. Pierre-Louis et al., Phys. Rev. Lett. (80), 4221 (1998)]. A careful…

Materials Science · Physics 2009-10-31 J. Kallunki , J. Krug

The energy landscapes of proteins have evolved to be different from most random heteropolymers. Many studies have concluded that evolutionary selection for rapid and reliable folding to a given structure that is stable at biological…

Disordered Systems and Neural Networks · Physics 2009-11-10 Steven S. Plotkin , Peter G. Wolynes

Solvent-based techniques usually involve preparing dilute blends of electron-donor and electron-acceptor materials dissolved in a volatile solvent. After some form of coating onto a substrate, the solvent evaporates. An initially…

Mesoscale and Nanoscale Physics · Physics 2012-03-01 Olga Wodo , Baskar Ganapathysubramanian

This paper explores how competing interactions in the intermolecular potential of fluids affect their structural transitions. This study employs a versatile potential model with a hard core followed by two constant steps, representing wells…

Soft Condensed Matter · Physics 2025-01-22 Ana M. Montero , Santos B. Yuste , Andrés Santos , Mariano López de Haro

Functional effects of different mutations are known to combine to the total effect in highly nontrivial ways. For the trait under evolutionary selection (`fitness'), measured values over all possible combinations of a set of mutations yield…

Populations and Evolution · Quantitative Biology 2015-05-27 Jasper Franke , Alexander Klözer , J. Arjan G. M. de Visser , Joachim Krug

Motivated by recent experiments on biomimetic membranes exposed to several aqueous phases, we theoretically study the morphology of a membrane in contact with a liquid droplet formed via aqueous phase separation. We concentrate on membranes…

Soft Condensed Matter · Physics 2012-02-07 Halim Kusumaatmaja , Reinhard Lipowsky

We study phase-ordering dynamics of a ferromagnetic system with a scalar order-parameter on fractal graphs. We propose a scaling approach, inspired by renormalization group ideas, where a crossover between distinct dynamical behaviors is…

Statistical Mechanics · Physics 2013-03-29 Raffaella Burioni , Federico Corberi , Alessandro Vezzani

The irreversible growth of magnetic films is studied in three-dimensional confined geometries of size $L\times L\times M$, where $M\gg L$ is the growing direction. Competing surface magnetic fields, applied to opposite corners of the…

Statistical Mechanics · Physics 2016-08-16 Virginia Manías , Julián Candia , Ezequiel V. Albano
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