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Motif searching is an important step in the detection of rare events occurring in a set of DNA or protein sequences. One formulation of the problem is known as (l,d)-motif search or Planted Motif Search (PMS). In PMS we are given two…

Data Structures and Algorithms · Computer Science 2013-07-03 Marius Nicolae , Sanguthevar Rajasekaran

Vector Perturbation Precoding (VPP) can speed up downlink data transmissions in Large and Massive Multi-User MIMO systems but is known to be NP-hard. While there are several algorithms in the literature for VPP under total power constraint,…

Networking and Internet Architecture · Computer Science 2022-04-27 Abhishek Kumar Singh , Kyle Jamieson

Training large language models (LLMs) is known to be challenging because of the huge computational and memory capacity requirements. To address these issues, it is common to use a cluster of GPUs with 3D parallelism, which splits a model…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-05-29 Jinkyu Yim , Jaeyong Song , Yerim Choi , Jaebeen Lee , Jaewon Jung , Hongsun Jang , Jinho Lee

Balanced search trees are widely used in computer science to efficiently maintain dynamic ordered data. To support efficient set operations (e.g., union, intersection, difference) using trees, the join-based framework is widely studied.…

Data Structures and Algorithms · Computer Science 2025-10-24 Michael Goodrich , Yan Gu , Ryuto Kitagawa , Yihan Sun

In-memory database query processing frequently involves substantial data transfers between the CPU and memory, leading to inefficiencies due to Von Neumann bottleneck. Processing-in-Memory (PIM) architectures offer a viable solution to…

Large Language Models (LLMs) impose massive computational demands, driving the need for scalable multi-chiplet accelerators. However, existing mapping space exploration efforts for such accelerators primarily focus on traditional…

Hardware Architecture · Computer Science 2026-04-02 Boyu Li , Zongwei Zhu , Yi Xiong , Qianyue Cao , Jiawei Geng , Xiaonan Zhang , Xi Li

Nearest neighbor (NN) search is inherently computationally expensive in high-dimensional spaces due to the curse of dimensionality. As a well-known solution, locality-sensitive hashing (LSH) is able to answer c-approximate NN (c-ANN)…

Databases · Computer Science 2021-07-13 Bolong Zheng , Xi Zhao , Lianggui Weng , Nguyen Quoc Viet Hung , Hang Liu , Christian S. Jensen

PIM architectures aim to reduce data transfer costs between processors and memory by integrating processing units within memory layers. Prior PIM architectures have shown potential to improve energy efficiency and performance. However, such…

Hardware Architecture · Computer Science 2025-10-10 Parker Hao Tian , Zahra Yousefijamarani , Alaa Alameldeen

The performance gains obtained by large language models (LLMs) are closely linked to their substantial computational and memory requirements. Quantized LLMs offer significant advantages with extremely quantized models, motivating the…

Hardware Architecture · Computer Science 2026-04-07 Ahmed J. Abdelmaksoud , Cristian Sestito , Shiwei Wang , Themis Prodromakis

The Simplex tableau has been broadly used and investigated in the industry and academia. With the advent of the big data era, ever larger problems are posed to be solved in ever larger machines whose architecture type did not exist in the…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-05-29 Demetrios Coutinho , Felipe O. Lins e Silva , Daniel Aloise , Samuel , Xavier-de-Souza

Performance optimization is the art of continuous seeking a harmonious mapping between the application domain and hardware. Recent years have witnessed a surge of deep learning (DL) applications in industry. Conventional wisdom for…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-11-27 Guoping Long , Jun Yang , Wei Lin

Similarity search is one of the most fundamental computations that are regularly performed on ever-increasing protein datasets. Scalability is of paramount importance for uncovering novel phenomena that occur at very large scales. We…

Distributed, Parallel, and Cluster Computing · Computer Science 2023-03-06 Oguz Selvitopi , Saliya Ekanayake , Giulia Guidi , Muaaz G. Awan , Georgios A. Pavlopoulos , Ariful Azad , Nikos Kyrpides , Leonid Oliker , Katherine Yelick , Aydın Buluç

Non-uniform structured network pruning methods can effectively reduce Large Language Model (LLM) size by eliminating redundant channels or layers, offering lower performance degradation than uniform strategies. However, existing non-uniform…

Machine Learning · Computer Science 2025-08-07 Zuxin Ma , Yunhe Cui , Yongbin Qin

Wide-area scaling trends require new approaches to Internet Protocol (IP) lookup, enabled by modern networking chips such as Intel Tofino, AMD Pensando, and Nvidia BlueField, which provide substantial ternary content-addressable memory…

Networking and Internet Architecture · Computer Science 2025-03-06 Robert Chang , Pradeep Dogga , Andy Fingerhut , Victor Rios , George Varghese

Finding optimal join orders is among the most crucial steps to be performed by query optimisers. Though extensively studied in data management research, the problem remains far from solved: While query optimisers rely on exhaustive search…

Databases · Computer Science 2025-10-24 Manuel Schönberger , Immanuel Trummer , Wolfgang Mauerer

Computing problems that handle large amounts of data necessitate the use of lossless data compression for efficient storage and transmission. We present a novel lossless universal data compression algorithm that uses parallel computational…

Information Theory · Computer Science 2023-07-19 Nikhil Krishnan , Dror Baron

Resource allocation in wireless networks, such as device-to-device (D2D) communications, is usually formulated as mixed integer nonlinear programming (MINLP) problems, which are generally NP-hard and difficult to get the optimal solutions.…

Information Theory · Computer Science 2020-12-22 Mengyuan Lee , Guanding Yu , Geoffrey Ye Li

Recent breakthroughs in solving reasoning, math and coding problems with Large Language Models (LLMs) have been enabled by investing substantial computation budgets at inference time. Therefore, inference speed is one of the most critical…

Structural pruning techniques are essential for deploying multimodal large language models (MLLMs) across various hardware platforms, from edge devices to cloud servers. However, current pruning methods typically determine optimal…

Computer Vision and Pattern Recognition · Computer Science 2025-06-17 Zhihan Zhang , Xiang Pan , Hongchen Wei , Zhenzhong Chen

Solving constrained nonlinear programs (NLPs) is of great importance in various domains such as power systems, robotics, and wireless communication networks. One widely used approach for addressing NLPs is the interior point method (IPM).…

Optimization and Control · Mathematics 2024-10-22 Xi Gao , Jinxin Xiong , Akang Wang , Qihong Duan , Jiang Xue , Qingjiang Shi